Variant report
Variant | rs59486247 |
---|---|
Chromosome Location | chr13:53790817-53790818 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr13:53225145..53227561-chr13:53790469..53792639,3 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000165416 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10507575 | 0.94[EUR][1000 genomes] |
rs12860364 | 0.92[EUR][1000 genomes] |
rs12867491 | 0.81[EUR][1000 genomes] |
rs12868253 | 1.00[AFR][1000 genomes];0.82[EUR][1000 genomes] |
rs12869523 | 0.81[EUR][1000 genomes] |
rs12870777 | 0.81[EUR][1000 genomes] |
rs12871248 | 0.81[EUR][1000 genomes] |
rs12874939 | 0.81[EUR][1000 genomes] |
rs12876105 | 0.81[EUR][1000 genomes] |
rs12876786 | 0.83[EUR][1000 genomes] |
rs12877599 | 0.81[EUR][1000 genomes] |
rs12877758 | 0.81[EUR][1000 genomes] |
rs12877912 | 0.83[EUR][1000 genomes] |
rs1343608 | 0.81[EUR][1000 genomes] |
rs17054812 | 0.81[EUR][1000 genomes] |
rs17054937 | 0.83[EUR][1000 genomes] |
rs1909651 | 0.94[EUR][1000 genomes] |
rs2806957 | 0.94[EUR][1000 genomes] |
rs34030659 | 0.81[EUR][1000 genomes] |
rs34031649 | 0.81[EUR][1000 genomes] |
rs34059997 | 0.81[EUR][1000 genomes] |
rs34110102 | 1.00[AFR][1000 genomes] |
rs34201111 | 0.81[EUR][1000 genomes] |
rs34374288 | 1.00[AFR][1000 genomes] |
rs34531708 | 0.81[EUR][1000 genomes] |
rs34557321 | 0.83[EUR][1000 genomes] |
rs34687272 | 0.81[EUR][1000 genomes] |
rs34708622 | 1.00[AFR][1000 genomes] |
rs34775431 | 1.00[AFR][1000 genomes] |
rs34820311 | 1.00[AFR][1000 genomes] |
rs34902019 | 0.81[EUR][1000 genomes] |
rs35114755 | 0.81[EUR][1000 genomes] |
rs35340650 | 0.83[EUR][1000 genomes] |
rs35404249 | 1.00[AFR][1000 genomes] |
rs35412628 | 1.00[AFR][1000 genomes] |
rs35628629 | 0.81[EUR][1000 genomes] |
rs35800707 | 0.83[EUR][1000 genomes] |
rs55702516 | 0.85[EUR][1000 genomes] |
rs55972529 | 0.81[EUR][1000 genomes] |
rs57273256 | 0.81[EUR][1000 genomes] |
rs58598010 | 0.93[ASN][1000 genomes] |
rs59297590 | 0.81[EUR][1000 genomes] |
rs59960345 | 0.81[EUR][1000 genomes] |
rs60408242 | 0.81[EUR][1000 genomes] |
rs61950078 | 1.00[AFR][1000 genomes] |
rs61950079 | 0.81[EUR][1000 genomes] |
rs61950086 | 0.81[EUR][1000 genomes] |
rs61950132 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs61950134 | 0.85[EUR][1000 genomes] |
rs61952460 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs61952467 | 1.00[AFR][1000 genomes] |
rs6561706 | 0.81[EUR][1000 genomes] |
rs6561707 | 0.81[EUR][1000 genomes] |
rs7320513 | 0.81[EUR][1000 genomes] |
rs7325509 | 0.88[EUR][1000 genomes] |
rs7998204 | 0.81[EUR][1000 genomes] |
rs7998385 | 0.88[EUR][1000 genomes] |
rs912053 | 0.88[EUR][1000 genomes] |
rs9563136 | 0.83[EUR][1000 genomes] |
rs9563137 | 0.83[EUR][1000 genomes] |
rs9563138 | 0.83[EUR][1000 genomes] |
rs9563145 | 0.85[EUR][1000 genomes] |
rs9563147 | 0.85[EUR][1000 genomes] |
rs9568814 | 0.83[EUR][1000 genomes] |
rs9568815 | 0.83[EUR][1000 genomes] |
rs9568816 | 0.83[EUR][1000 genomes] |
rs9568817 | 0.83[EUR][1000 genomes] |
rs9568820 | 0.83[EUR][1000 genomes] |
rs9568821 | 0.83[EUR][1000 genomes] |
rs9568822 | 0.83[EUR][1000 genomes] |
rs9568823 | 0.83[EUR][1000 genomes] |
rs9568824 | 0.83[EUR][1000 genomes] |
rs9568825 | 0.83[EUR][1000 genomes] |
rs9568827 | 0.88[EUR][1000 genomes] |
rs9568834 | 0.85[EUR][1000 genomes] |
rs995821 | 0.94[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1050969 | chr13:53665927-54064861 | Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | esv1840677 | chr13:53774627-53791895 | Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:53790600-53791000 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
2 | chr13:53790800-53791600 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |