Variant report

Variant	rs9563145
Chromosome Location	chr13:53830938-53830939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr13:53830934-53831057	HepG2	liver:	n/a	chr13:53830977-53830990 chr13:53830978-53830989

Variant related genes	Relation type
RN7SL618P	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10507575	0.82[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12860364	0.82[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12876786	0.80[EUR][1000 genomes]
rs12877912	0.80[EUR][1000 genomes]
rs1322946	0.85[ASN][1000 genomes]
rs1555549	0.90[ASN][1000 genomes]
rs17054937	0.80[EUR][1000 genomes]
rs1909651	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2806957	0.82[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34557321	0.80[EUR][1000 genomes]
rs35340650	0.80[EUR][1000 genomes]
rs35800707	0.80[EUR][1000 genomes]
rs55702516	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59486247	0.85[EUR][1000 genomes]
rs61950132	0.82[EUR][1000 genomes]
rs61950134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7325509	0.86[EUR][1000 genomes]
rs7998385	0.86[EUR][1000 genomes]
rs8002469	0.85[CEU][hapmap];0.90[TSI][hapmap]
rs912053	0.86[EUR][1000 genomes]
rs9563136	0.80[EUR][1000 genomes]
rs9563137	0.80[EUR][1000 genomes]
rs9563138	0.80[EUR][1000 genomes]
rs9563146	0.98[ASN][1000 genomes]
rs9563147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568814	0.80[EUR][1000 genomes]
rs9568815	0.80[EUR][1000 genomes]
rs9568816	0.80[EUR][1000 genomes]
rs9568817	0.80[EUR][1000 genomes]
rs9568820	0.80[EUR][1000 genomes]
rs9568821	0.80[EUR][1000 genomes]
rs9568822	0.80[EUR][1000 genomes]
rs9568823	0.80[EUR][1000 genomes]
rs9568824	0.80[EUR][1000 genomes]
rs9568825	0.80[EUR][1000 genomes]
rs9568827	0.86[EUR][1000 genomes]
rs9568828	0.82[CEU][hapmap];0.89[CHB][hapmap]
rs9568834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs995821	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2756368	chr13:53824599-53923599	Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53826800-53834600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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