Variant report

Variant	rs55702516
Chromosome Location	chr13:53842388-53842389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10507575	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12860364	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12870777	1.00[AFR][1000 genomes]
rs12871248	1.00[AFR][1000 genomes]
rs12876786	0.80[EUR][1000 genomes]
rs12877912	0.80[EUR][1000 genomes]
rs1322946	0.86[ASN][1000 genomes]
rs1555549	0.92[ASN][1000 genomes]
rs17054812	1.00[AFR][1000 genomes]
rs17054937	0.80[EUR][1000 genomes]
rs1909651	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2806957	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34163916	1.00[AFR][1000 genomes]
rs34557321	0.80[EUR][1000 genomes]
rs35003538	1.00[AFR][1000 genomes]
rs35007240	1.00[AFR][1000 genomes]
rs35340650	0.80[EUR][1000 genomes]
rs35800707	0.80[EUR][1000 genomes]
rs57454139	1.00[AFR][1000 genomes]
rs59486247	0.85[EUR][1000 genomes]
rs59960345	1.00[AFR][1000 genomes]
rs61950074	1.00[AFR][1000 genomes]
rs61950132	0.82[EUR][1000 genomes]
rs61950134	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61950522	1.00[AFR][1000 genomes]
rs7325509	0.86[EUR][1000 genomes]
rs7998385	0.86[EUR][1000 genomes]
rs912053	0.86[EUR][1000 genomes]
rs9563136	0.80[EUR][1000 genomes]
rs9563137	0.80[EUR][1000 genomes]
rs9563138	0.80[EUR][1000 genomes]
rs9563145	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9563146	1.00[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9563147	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568814	0.80[EUR][1000 genomes]
rs9568815	0.80[EUR][1000 genomes]
rs9568816	0.80[EUR][1000 genomes]
rs9568817	0.80[EUR][1000 genomes]
rs9568820	0.80[EUR][1000 genomes]
rs9568821	0.80[EUR][1000 genomes]
rs9568822	0.80[EUR][1000 genomes]
rs9568823	0.80[EUR][1000 genomes]
rs9568824	0.80[EUR][1000 genomes]
rs9568825	0.80[EUR][1000 genomes]
rs9568827	0.86[EUR][1000 genomes]
rs9568834	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs995821	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2756368	chr13:53824599-53923599	Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53836000-53843800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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