Variant report

Variant	rs1322946
Chromosome Location	chr13:53815798-53815799
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10507575	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs12860364	0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs1555549	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1909651	0.97[ASN][1000 genomes]
rs2806957	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.96[ASN][1000 genomes]
rs55702516	0.86[ASN][1000 genomes]
rs61950134	0.86[ASN][1000 genomes]
rs7325509	0.89[ASN][1000 genomes]
rs9563145	0.94[CHB][hapmap];0.93[CHD][hapmap];0.85[ASN][1000 genomes]
rs9563146	0.87[ASN][1000 genomes]
rs9563147	0.86[ASN][1000 genomes]
rs9568828	0.94[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs9568834	0.85[ASN][1000 genomes]
rs995821	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53812600-53816200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:53813000-53816200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:53814600-53815800	Enhancers	Fetal Kidney	kidney
4	chr13:53814800-53815800	Weak transcription	Brain Germinal Matrix	brain
5	chr13:53815200-53816200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr13:53815200-53816200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr13:53815400-53815800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr13:53815400-53816000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr13:53815400-53816400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:53815400-53816400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr13:53815400-53816600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:53815600-53816400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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