Variant report

Variant	rs1555549
Chromosome Location	chr13:53824637-53824638
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10507575	1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[ASN][1000 genomes]
rs12860364	0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[ASN][1000 genomes]
rs1322946	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1909651	0.91[ASN][1000 genomes]
rs2806957	1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[ASN][1000 genomes]
rs55702516	0.92[ASN][1000 genomes]
rs61950134	0.92[ASN][1000 genomes]
rs7325509	0.83[ASN][1000 genomes]
rs9563145	1.00[ASW][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs9563146	0.93[ASN][1000 genomes]
rs9563147	0.92[ASN][1000 genomes]
rs9568828	0.94[CHB][hapmap];0.83[ASN][1000 genomes]
rs9568834	0.90[ASN][1000 genomes]
rs995821	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2756368	chr13:53824599-53923599	Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53823400-53825400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:53823800-53825000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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