Variant report

Variant	rs35404249
Chromosome Location	chr13:53639252-53639253
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12868253	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs34110102	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs34374288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34708622	1.00[AFR][1000 genomes]
rs34775431	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34820311	1.00[AFR][1000 genomes]
rs35412628	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59486247	1.00[AFR][1000 genomes]
rs61950078	1.00[AFR][1000 genomes]
rs61950132	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53633200-53642200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:53635600-53641600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr13:53636200-53641600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr13:53636200-53642400	Weak transcription	Brain Anterior Caudate	brain
5	chr13:53636400-53642200	Weak transcription	Brain Hippocampus Middle	brain
6	chr13:53636600-53642000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr13:53636600-53642200	Weak transcription	Brain Angular Gyrus	brain
8	chr13:53636800-53641600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:53637600-53641600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:53637800-53639600	Enhancers	Pancreas	Pancrea
11	chr13:53637800-53641000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr13:53638000-53640000	Enhancers	Fetal Muscle Leg	muscle
13	chr13:53638400-53639600	Enhancers	Brain Germinal Matrix	brain
14	chr13:53638400-53639600	Enhancers	Ovary	ovary
15	chr13:53639000-53642600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr13:53639200-53654800	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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