Variant report

Variant	rs34820311
Chromosome Location	chr13:53695561-53695562
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs12865218	0.83[EUR][1000 genomes]
rs12867491	0.86[EUR][1000 genomes]
rs12868253	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12869523	0.86[EUR][1000 genomes]
rs12870777	0.86[EUR][1000 genomes]
rs12871248	0.86[EUR][1000 genomes]
rs12874939	0.86[EUR][1000 genomes]
rs12876105	0.86[EUR][1000 genomes]
rs12876387	0.83[EUR][1000 genomes]
rs12876786	0.83[EUR][1000 genomes]
rs12877178	0.83[EUR][1000 genomes]
rs12877599	0.86[EUR][1000 genomes]
rs12877758	0.86[EUR][1000 genomes]
rs12877912	0.83[EUR][1000 genomes]
rs1343608	0.86[EUR][1000 genomes]
rs17054812	0.86[EUR][1000 genomes]
rs17054937	0.83[EUR][1000 genomes]
rs34030659	0.86[EUR][1000 genomes]
rs34031649	0.86[EUR][1000 genomes]
rs34059997	0.86[EUR][1000 genomes]
rs34110102	1.00[AFR][1000 genomes]
rs34163916	0.83[EUR][1000 genomes]
rs34201111	0.86[EUR][1000 genomes]
rs34211399	0.83[EUR][1000 genomes]
rs34298498	0.83[EUR][1000 genomes]
rs34330988	0.83[EUR][1000 genomes]
rs34374288	1.00[AFR][1000 genomes]
rs34531708	0.86[EUR][1000 genomes]
rs34557321	0.83[EUR][1000 genomes]
rs34642277	0.83[EUR][1000 genomes]
rs34687272	0.86[EUR][1000 genomes]
rs34708622	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34756826	0.84[EUR][1000 genomes]
rs34775431	1.00[AFR][1000 genomes]
rs34902019	0.86[EUR][1000 genomes]
rs35003538	0.83[EUR][1000 genomes]
rs35007240	0.83[EUR][1000 genomes]
rs35114755	0.86[EUR][1000 genomes]
rs35226075	0.83[EUR][1000 genomes]
rs35340650	0.83[EUR][1000 genomes]
rs35404249	1.00[AFR][1000 genomes]
rs35412628	1.00[AFR][1000 genomes]
rs35575822	0.83[EUR][1000 genomes]
rs35625606	0.83[EUR][1000 genomes]
rs35628629	0.80[EUR][1000 genomes]
rs35666947	0.83[EUR][1000 genomes]
rs35727089	0.83[EUR][1000 genomes]
rs35756659	0.83[EUR][1000 genomes]
rs35765587	0.83[EUR][1000 genomes]
rs35800707	0.83[EUR][1000 genomes]
rs55972529	0.86[EUR][1000 genomes]
rs57273256	0.86[EUR][1000 genomes]
rs57454139	0.83[EUR][1000 genomes]
rs59155861	0.85[EUR][1000 genomes]
rs59297590	0.86[EUR][1000 genomes]
rs59486247	1.00[AFR][1000 genomes]
rs59513810	0.83[EUR][1000 genomes]
rs59960345	0.86[EUR][1000 genomes]
rs60408242	0.86[EUR][1000 genomes]
rs61950074	0.83[EUR][1000 genomes]
rs61950078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61950079	0.86[EUR][1000 genomes]
rs61950086	0.86[EUR][1000 genomes]
rs61950132	1.00[AFR][1000 genomes]
rs61950504	0.83[EUR][1000 genomes]
rs61950522	0.83[EUR][1000 genomes]
rs61952460	1.00[AFR][1000 genomes]
rs6561705	0.81[EUR][1000 genomes]
rs6561706	0.86[EUR][1000 genomes]
rs6561707	0.86[EUR][1000 genomes]
rs7320513	0.86[EUR][1000 genomes]
rs74086489	0.83[EUR][1000 genomes]
rs7998204	0.86[EUR][1000 genomes]
rs9563136	0.83[EUR][1000 genomes]
rs9563137	0.83[EUR][1000 genomes]
rs9563138	0.83[EUR][1000 genomes]
rs9568814	0.83[EUR][1000 genomes]
rs9568815	0.83[EUR][1000 genomes]
rs9568816	0.83[EUR][1000 genomes]
rs9568817	0.83[EUR][1000 genomes]
rs9568820	0.83[EUR][1000 genomes]
rs9568821	0.83[EUR][1000 genomes]
rs9568822	0.83[EUR][1000 genomes]
rs9568823	0.83[EUR][1000 genomes]
rs9568824	0.83[EUR][1000 genomes]
rs9568825	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53694200-53695600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr13:53694400-53696800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr13:53694600-53696400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr13:53694800-53696400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr13:53694800-53696400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr13:53694800-53696400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr13:53694800-53696600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr13:53695000-53695600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr13:53695000-53695600	Enhancers	Fetal Muscle Leg	muscle
10	chr13:53695000-53695800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr13:53695000-53695800	Enhancers	Fetal Stomach	stomach
12	chr13:53695000-53696400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr13:53695000-53696400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr13:53695400-53695600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr13:53695400-53695800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr13:53695400-53695800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr13:53695400-53695800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr13:53695400-53696400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr13:53695400-53696400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr13:53695400-53696400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr13:53695400-53696400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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