Variant report

Variant	rs1345990
Chromosome Location	chr6:143686864-143686865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143679089..143681456-chr6:143685402..143687575,2	K562	blood:
2	chr6:143681918..143684523-chr6:143686177..143687883,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12527836	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13213970	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1345993	0.95[EUR][1000 genomes]
rs1424925	0.94[EUR][1000 genomes]
rs1424926	0.94[EUR][1000 genomes]
rs1424927	0.95[EUR][1000 genomes]
rs1424928	0.95[EUR][1000 genomes]
rs1424929	0.95[EUR][1000 genomes]
rs1424930	0.95[EUR][1000 genomes]
rs1424932	0.95[EUR][1000 genomes]
rs2216918	0.93[EUR][1000 genomes]
rs2328477	0.97[ASN][1000 genomes]
rs4645437	0.95[EUR][1000 genomes]
rs4896647	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4896648	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4896651	0.95[EUR][1000 genomes]
rs6570556	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6570557	0.95[EUR][1000 genomes]
rs6914161	0.97[ASN][1000 genomes]
rs6915453	0.84[AFR][1000 genomes]
rs6922572	0.95[EUR][1000 genomes]
rs6928185	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373389	0.91[EUR][1000 genomes]
rs9376744	0.82[CEU][hapmap]
rs9390084	0.91[EUR][1000 genomes]
rs9403489	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496592	0.91[EUR][1000 genomes]
rs972151	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs974754	0.94[EUR][1000 genomes]
rs989696	0.95[EUR][1000 genomes]
rs993442	0.95[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143673000-143708000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links