Variant report

Variant	rs9390084
Chromosome Location	chr6:143667512-143667513
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10457048	0.93[ASN][1000 genomes]
rs10457746	0.97[ASN][1000 genomes]
rs10457747	0.93[ASN][1000 genomes]
rs11155292	0.91[ASN][1000 genomes]
rs12189815	0.91[ASN][1000 genomes]
rs12195895	0.93[ASN][1000 genomes]
rs12197703	0.93[ASN][1000 genomes]
rs12199599	0.91[ASN][1000 genomes]
rs12200633	0.94[ASN][1000 genomes]
rs12205775	0.93[ASN][1000 genomes]
rs12209005	0.97[ASN][1000 genomes]
rs12209255	0.97[ASN][1000 genomes]
rs12212973	0.91[ASN][1000 genomes]
rs12525791	0.91[ASN][1000 genomes]
rs12525816	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12527836	0.91[EUR][1000 genomes]
rs13213970	0.91[EUR][1000 genomes]
rs1345990	0.91[EUR][1000 genomes]
rs1345992	0.94[ASN][1000 genomes]
rs1345993	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1424923	0.96[ASN][1000 genomes]
rs1424925	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1424926	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1424927	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1424928	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1424929	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1424930	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1424931	0.93[ASN][1000 genomes]
rs1424932	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1424934	0.91[ASN][1000 genomes]
rs1424936	0.91[ASN][1000 genomes]
rs1834268	0.91[ASN][1000 genomes]
rs1885650	0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs2216918	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2303387	0.90[ASN][1000 genomes]
rs4645437	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4896647	0.93[EUR][1000 genomes]
rs4896648	0.93[EUR][1000 genomes]
rs4896651	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62430899	0.93[ASN][1000 genomes]
rs62430900	0.91[ASN][1000 genomes]
rs62430901	0.91[ASN][1000 genomes]
rs6570556	0.91[EUR][1000 genomes]
rs6570557	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6908200	0.93[ASN][1000 genomes]
rs6922572	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6928185	0.91[EUR][1000 genomes]
rs6937320	0.93[ASN][1000 genomes]
rs9373389	0.90[EUR][1000 genomes]
rs9403489	0.91[EUR][1000 genomes]
rs9496592	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs972151	0.91[EUR][1000 genomes]
rs974754	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs989696	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs993442	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143642600-143675600	Weak transcription	Left Ventricle	heart
2	chr6:143645000-143683200	Weak transcription	Pancreas	Pancrea
3	chr6:143654000-143672000	Weak transcription	Ovary	ovary
4	chr6:143654400-143667800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:143658400-143670200	Weak transcription	NHDF-Ad	bronchial
6	chr6:143658800-143669400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:143659400-143668400	Weak transcription	Fetal Intestine Small	intestine
8	chr6:143661000-143669400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:143662800-143675600	Weak transcription	Liver	Liver
10	chr6:143663000-143670800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:143666200-143667800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:143667200-143667600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:143667200-143667600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:143667200-143667600	Enhancers	Osteobl	bone

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