Variant report

Variant	rs1424929
Chromosome Location	chr6:143692246-143692247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143688955..143690864-chr6:143692180..143693916,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10457048	0.97[ASN][1000 genomes]
rs10457746	0.93[ASN][1000 genomes]
rs10457747	0.97[ASN][1000 genomes]
rs11155292	0.96[ASN][1000 genomes]
rs12189815	0.96[ASN][1000 genomes]
rs12195895	0.97[ASN][1000 genomes]
rs12197703	0.97[ASN][1000 genomes]
rs12199599	0.96[ASN][1000 genomes]
rs12200633	0.96[ASN][1000 genomes]
rs12205775	0.97[ASN][1000 genomes]
rs12209005	0.93[ASN][1000 genomes]
rs12209255	0.93[ASN][1000 genomes]
rs12212973	0.96[ASN][1000 genomes]
rs12525791	0.96[ASN][1000 genomes]
rs12525816	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12527836	0.95[EUR][1000 genomes]
rs13213970	0.95[EUR][1000 genomes]
rs1345990	0.95[EUR][1000 genomes]
rs1345992	0.96[ASN][1000 genomes]
rs1345993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1424923	0.95[ASN][1000 genomes]
rs1424925	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1424926	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1424927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1424928	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1424930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1424931	0.97[ASN][1000 genomes]
rs1424932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1424934	0.96[ASN][1000 genomes]
rs1424936	0.96[ASN][1000 genomes]
rs1834268	0.96[ASN][1000 genomes]
rs1885650	0.94[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs2216918	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2303387	0.86[ASN][1000 genomes]
rs4645437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896647	0.92[EUR][1000 genomes]
rs4896648	0.92[EUR][1000 genomes]
rs4896651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62430899	0.97[ASN][1000 genomes]
rs62430900	0.96[ASN][1000 genomes]
rs62430901	0.96[ASN][1000 genomes]
rs6570556	0.95[EUR][1000 genomes]
rs6570557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908200	0.97[ASN][1000 genomes]
rs6922572	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6928185	0.95[EUR][1000 genomes]
rs6937320	0.97[ASN][1000 genomes]
rs9373389	0.87[EUR][1000 genomes]
rs9390084	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9403489	0.95[EUR][1000 genomes]
rs9496592	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs972151	0.95[EUR][1000 genomes]
rs974754	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs989696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs993442	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143673000-143708000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:143692000-143692400	Enhancers	Fetal Lung	lung
3	chr6:143692000-143692600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:143692200-143694200	Weak transcription	GM12878-XiMat	blood

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