Variant report

Variant	rs2303387
Chromosome Location	chr6:143654823-143654824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143642972..143644703-chr6:143653597..143655440,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10457048	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10457746	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10457747	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11155292	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12189815	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12195895	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12197703	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12199599	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12200633	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12205775	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12209005	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12209255	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12212973	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12525791	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12525816	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1345992	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1345993	0.86[ASN][1000 genomes]
rs1424923	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1424925	0.86[ASN][1000 genomes]
rs1424926	0.86[ASN][1000 genomes]
rs1424927	0.86[ASN][1000 genomes]
rs1424928	0.86[ASN][1000 genomes]
rs1424929	0.86[ASN][1000 genomes]
rs1424930	0.86[ASN][1000 genomes]
rs1424931	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1424932	0.86[ASN][1000 genomes]
rs1424934	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1424936	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs170350	0.86[EUR][1000 genomes]
rs1834268	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1885650	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2216918	0.86[ASN][1000 genomes]
rs223593	0.87[EUR][1000 genomes]
rs223594	0.87[EUR][1000 genomes]
rs223595	0.87[EUR][1000 genomes]
rs223596	0.81[EUR][1000 genomes]
rs223597	0.87[EUR][1000 genomes]
rs223598	0.87[EUR][1000 genomes]
rs223600	0.87[EUR][1000 genomes]
rs223601	0.87[EUR][1000 genomes]
rs223602	0.87[EUR][1000 genomes]
rs223603	0.81[EUR][1000 genomes]
rs223608	0.86[EUR][1000 genomes]
rs223609	0.83[EUR][1000 genomes]
rs223610	0.86[EUR][1000 genomes]
rs2328477	0.82[EUR][1000 genomes]
rs4645437	0.86[ASN][1000 genomes]
rs4896651	0.86[ASN][1000 genomes]
rs62430899	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62430900	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62430901	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62430902	0.87[EUR][1000 genomes]
rs6570557	0.86[ASN][1000 genomes]
rs6908200	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6914161	0.82[EUR][1000 genomes]
rs6922572	0.86[ASN][1000 genomes]
rs6937320	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9390084	0.90[ASN][1000 genomes]
rs9496592	0.90[ASN][1000 genomes]
rs974754	0.86[ASN][1000 genomes]
rs989696	0.86[ASN][1000 genomes]
rs993442	0.88[ASN][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143642600-143675600	Weak transcription	Left Ventricle	heart
2	chr6:143643800-143661200	Weak transcription	Aorta	Aorta
3	chr6:143645000-143683200	Weak transcription	Pancreas	Pancrea
4	chr6:143645200-143656800	Weak transcription	Psoas Muscle	Psoas
5	chr6:143645800-143655600	Weak transcription	Fetal Brain Female	brain
6	chr6:143646000-143664000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:143647200-143657400	Weak transcription	NHLF	lung
8	chr6:143647400-143658200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:143650800-143657200	Weak transcription	NH-A	brain
10	chr6:143650800-143657400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:143650800-143657400	Weak transcription	NHDF-Ad	bronchial
12	chr6:143652400-143662200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:143652800-143656400	Weak transcription	Right Ventricle	heart
14	chr6:143652800-143664000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:143653000-143658200	Weak transcription	Fetal Intestine Small	intestine
16	chr6:143653000-143659000	Weak transcription	K562	blood
17	chr6:143653000-143662200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr6:143653000-143665600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr6:143653400-143663800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:143653600-143655200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr6:143653600-143656000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:143653600-143658000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:143653800-143655200	Weak transcription	Lung	lung
24	chr6:143653800-143657800	Weak transcription	HSMMtube	muscle
25	chr6:143653800-143660600	Weak transcription	Fetal Stomach	stomach
26	chr6:143653800-143661000	Weak transcription	Fetal Muscle Leg	muscle
27	chr6:143653800-143663400	Weak transcription	Fetal Lung	lung
28	chr6:143654000-143656200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:143654000-143672000	Weak transcription	Ovary	ovary
30	chr6:143654200-143655400	Weak transcription	Brain Anterior Caudate	brain
31	chr6:143654200-143656200	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr6:143654200-143656200	Strong transcription	HepG2	liver
33	chr6:143654200-143656600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr6:143654200-143657400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:143654200-143661600	Strong transcription	Liver	Liver
36	chr6:143654400-143655000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:143654400-143657400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:143654400-143667800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:143654600-143656800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:143654600-143656800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:143654600-143657200	Weak transcription	HSMM	muscle
42	chr6:143654600-143657200	Weak transcription	Osteobl	bone
43	chr6:143654800-143655200	Strong transcription	Fetal Intestine Large	intestine
44	chr6:143654800-143655200	Flanking Active TSS	HMEC	breast
45	chr6:143654800-143655600	Strong transcription	Adipose Nuclei	Adipose
46	chr6:143654800-143655800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:143654800-143656400	Flanking Active TSS	NHEK	skin
48	chr6:143654800-143657000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr6:143654800-143658000	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr6:143654800-143663600	Weak transcription	Fetal Kidney	kidney

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