Variant report

Variant	rs135480
Chromosome Location	chr22:32941967-32941968
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:32936212..32939434-chr22:32941471..32944860,3	MCF-7	breast:
2	chr22:32928261..32930206-chr22:32941848..32945247,3	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs135474	0.91[ASN][1000 genomes]
rs135476	0.91[ASN][1000 genomes]
rs135478	0.91[ASN][1000 genomes]
rs135483	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2213405	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2239766	0.91[ASN][1000 genomes]
rs2251400	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2710380	0.92[ASN][1000 genomes]
rs2858339	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5749457	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5754137	0.91[ASN][1000 genomes]
rs5754138	0.91[ASN][1000 genomes]
rs5754139	0.91[ASN][1000 genomes]
rs762909	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9609593	0.92[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32934200-32942200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr22:32935200-32942800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr22:32936800-32942000	Weak transcription	Liver	Liver
4	chr22:32937200-32942000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr22:32938800-32942200	Weak transcription	K562	blood
6	chr22:32939200-32942400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr22:32939200-32942400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr22:32939200-32943000	Weak transcription	Spleen	Spleen
9	chr22:32939400-32942000	Weak transcription	Fetal Lung	lung
10	chr22:32939400-32942400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr22:32939800-32942200	Weak transcription	Placenta	Placenta
12	chr22:32939800-32942400	Weak transcription	Left Ventricle	heart
13	chr22:32939800-32949000	Weak transcription	Lung	lung
14	chr22:32940400-32942400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr22:32940800-32942400	Enhancers	NHLF	lung
16	chr22:32940800-32943000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr22:32940800-32943000	Enhancers	Osteobl	bone
18	chr22:32940800-32943200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr22:32940800-32943400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr22:32940800-32944000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr22:32941000-32942200	Enhancers	HSMM	muscle
22	chr22:32941000-32942400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr22:32941000-32942400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr22:32941000-32942800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr22:32941000-32943200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr22:32941000-32943800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr22:32941000-32943800	Enhancers	Ovary	ovary
28	chr22:32941200-32942000	Weak transcription	Right Atrium	heart
29	chr22:32941200-32942400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr22:32941200-32943400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr22:32941400-32942000	Weak transcription	NHDF-Ad	bronchial
32	chr22:32941400-32943000	Enhancers	HepG2	liver
33	chr22:32941400-32943200	Enhancers	NHEK	skin
34	chr22:32941400-32943800	Enhancers	Hela-S3	cervix
35	chr22:32941400-32944000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr22:32941800-32942200	Weak transcription	Fetal Stomach	stomach
37	chr22:32941800-32943800	Enhancers	Adipose Nuclei	Adipose

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