Variant report

Variant	rs2213405
Chromosome Location	chr22:32940660-32940661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:31998728-32011472..22:32937912-32941862	K562	blood:
2	chr22:32935341..32940851-chr22:32952313..32956913,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198089	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs135123	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs135474	0.88[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs135476	0.88[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs135478	0.88[CHB][hapmap];0.84[CHD][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs135480	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs135483	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2105865	0.83[CEU][hapmap];0.82[CHD][hapmap];0.80[GIH][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs2239766	0.86[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs2251400	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2710380	0.88[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs2858339	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5749457	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5754137	0.88[CHB][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];0.83[MEX][hapmap];0.94[ASN][1000 genomes]
rs5754138	0.88[CHB][hapmap];0.84[CHD][hapmap];0.92[JPT][hapmap];0.83[MEX][hapmap];0.94[ASN][1000 genomes]
rs5754139	0.88[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs762909	0.85[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9609593	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv914981	chr22:32912277-32940660	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32929000-32940800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr22:32934200-32942200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr22:32935200-32942800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr22:32936200-32941400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr22:32936600-32941000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr22:32936800-32941400	Weak transcription	HepG2	liver
7	chr22:32936800-32942000	Weak transcription	Liver	Liver
8	chr22:32937200-32942000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr22:32937400-32941400	Weak transcription	Hela-S3	cervix
10	chr22:32938800-32941000	Weak transcription	HSMM	muscle
11	chr22:32938800-32942200	Weak transcription	K562	blood
12	chr22:32939200-32940800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr22:32939200-32940800	Weak transcription	HSMMtube	muscle
14	chr22:32939200-32940800	Weak transcription	NHDF-Ad	bronchial
15	chr22:32939200-32940800	Weak transcription	NHLF	lung
16	chr22:32939200-32941000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr22:32939200-32942400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr22:32939200-32942400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr22:32939200-32943000	Weak transcription	Spleen	Spleen
20	chr22:32939400-32942000	Weak transcription	Fetal Lung	lung
21	chr22:32939400-32942400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr22:32939600-32941000	Weak transcription	Ovary	ovary
23	chr22:32939600-32941000	Weak transcription	Right Ventricle	heart
24	chr22:32939800-32941200	Weak transcription	Adipose Nuclei	Adipose
25	chr22:32939800-32942200	Weak transcription	Placenta	Placenta
26	chr22:32939800-32942400	Weak transcription	Left Ventricle	heart
27	chr22:32939800-32949000	Weak transcription	Lung	lung
28	chr22:32940000-32941000	Weak transcription	Right Atrium	heart
29	chr22:32940400-32940800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr22:32940400-32942400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr22:32940600-32941800	Enhancers	Fetal Stomach	stomach

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