Variant report

Variant	rs2105865
Chromosome Location	chr22:32950053-32950054
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs135123	0.88[CHB][hapmap]
rs135474	0.88[CHB][hapmap]
rs135476	0.88[CHB][hapmap]
rs135478	0.88[CHB][hapmap]
rs135483	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2213405	0.83[CEU][hapmap];0.82[CHD][hapmap];0.80[GIH][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs2239766	0.86[CHB][hapmap]
rs2251400	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2710380	0.88[CHB][hapmap]
rs2858339	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs5749457	0.84[CEU][hapmap];0.88[CHB][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap]
rs5754137	0.88[CHB][hapmap]
rs5754138	0.88[CHB][hapmap]
rs5754139	0.88[CHB][hapmap]
rs762909	0.88[CHB][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2105865	XBP1	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32943200-32951200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr22:32943200-32959400	Weak transcription	Left Ventricle	heart
3	chr22:32943800-32951000	Weak transcription	Ovary	ovary
4	chr22:32943800-32951200	Weak transcription	Adipose Nuclei	Adipose
5	chr22:32943800-32951200	Weak transcription	Right Atrium	heart
6	chr22:32943800-32953200	Weak transcription	Spleen	Spleen
7	chr22:32948000-32951400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr22:32948800-32951000	Weak transcription	Small Intestine	intestine
9	chr22:32949000-32953200	Weak transcription	Colonic Mucosa	Colon
10	chr22:32949600-32950200	Enhancers	Lung	lung
11	chr22:32950000-32950200	Enhancers	Right Ventricle	heart
12	chr22:32950000-32950200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr22:32950000-32951400	Weak transcription	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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