Variant report

Variant	rs2858339
Chromosome Location	chr22:32945806-32945807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs135474	0.82[ASN][1000 genomes]
rs135476	0.82[ASN][1000 genomes]
rs135478	0.82[ASN][1000 genomes]
rs135480	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs135483	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2105865	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2213405	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2239766	0.82[ASN][1000 genomes]
rs2251400	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2710380	0.91[ASN][1000 genomes]
rs5749457	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5754137	0.82[ASN][1000 genomes]
rs5754138	0.82[ASN][1000 genomes]
rs5754139	0.82[ASN][1000 genomes]
rs762909	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9609593	0.91[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32939800-32949000	Weak transcription	Lung	lung
2	chr22:32943200-32951200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr22:32943200-32959400	Weak transcription	Left Ventricle	heart
4	chr22:32943800-32951000	Weak transcription	Ovary	ovary
5	chr22:32943800-32951200	Weak transcription	Adipose Nuclei	Adipose
6	chr22:32943800-32951200	Weak transcription	Right Atrium	heart
7	chr22:32943800-32953200	Weak transcription	Spleen	Spleen
8	chr22:32945800-32947200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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