Variant report

Variant	rs1356121
Chromosome Location	chr5:127142174-127142175
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1002214	0.81[AMR][1000 genomes]
rs10044507	0.98[ASN][1000 genomes]
rs10066288	0.81[AMR][1000 genomes]
rs10067219	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1067705	0.81[AMR][1000 genomes]
rs1092294	0.81[AMR][1000 genomes]
rs1213745	0.81[AMR][1000 genomes]
rs13155734	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432641	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432642	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464132	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1616107	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2673770	0.81[AMR][1000 genomes]
rs6867166	0.85[CHB][hapmap];0.90[JPT][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6878186	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs711361	0.81[AMR][1000 genomes]
rs711363	0.95[CEU][hapmap]
rs711364	0.95[CEU][hapmap]
rs711369	0.81[AMR][1000 genomes]
rs7729013	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs790829	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs790834	0.81[AMR][1000 genomes]
rs790839	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs790840	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs796919	0.81[AMR][1000 genomes]
rs806464	0.81[AMR][1000 genomes]
rs810996	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127135200-127143800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:127138600-127146400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:127139000-127145600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:127139200-127151800	Weak transcription	Stomach Mucosa	stomach
5	chr5:127141000-127147400	Weak transcription	NHDF-Ad	bronchial
6	chr5:127141000-127148000	Weak transcription	Colon Smooth Muscle	Colon
7	chr5:127141200-127147400	Weak transcription	NHLF	lung
8	chr5:127141400-127142400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:127141400-127145800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:127141800-127147600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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