Variant report

Variant	rs6867166
Chromosome Location	chr5:127126847-127126848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10044507	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10067219	0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs13155734	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1356121	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1432641	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1432642	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1464132	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1616107	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6878186	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7729013	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs790829	0.89[ASW][hapmap]
rs790839	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs790840	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv965610	chr5:127122488-127132347	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127125800-127131200	Weak transcription	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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