Variant report

Variant	rs7729013
Chromosome Location	chr5:127100501-127100502
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:127096123..127098291-chr5:127100093..127102931,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1002214	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10044507	1.00[ASN][1000 genomes]
rs10066288	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10067219	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1067705	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1086479	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1092294	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1213745	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13155734	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1356121	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1432641	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1432642	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1464132	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1616107	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2673770	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6867166	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6878186	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs711361	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs711369	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs790829	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs790834	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs790839	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs790840	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs790841	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs796919	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs806464	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs810996	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830480	chr5:126964751-127124522	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127090800-127102400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:127094000-127101800	Weak transcription	HUVEC	blood vessel
3	chr5:127095200-127102800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:127098600-127102800	Weak transcription	Psoas Muscle	Psoas
5	chr5:127099000-127102600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:127099000-127107600	Weak transcription	Left Ventricle	heart
7	chr5:127099200-127101600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:127099200-127106000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr5:127099800-127104200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links