Variant report

Variant	rs6878186
Chromosome Location	chr5:127128341-127128342
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1002214	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10044507	0.98[ASN][1000 genomes]
rs10066288	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10067219	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1067705	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1086479	0.91[EUR][1000 genomes]
rs1092294	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1213745	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13155734	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1356121	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1616107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2673770	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6867166	0.85[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs711361	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs711363	0.95[CEU][hapmap]
rs711364	0.95[CEU][hapmap]
rs711369	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7729013	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs790829	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs790834	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs790839	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs790840	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs790841	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs796919	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs806464	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs810996	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv965610	chr5:127122488-127132347	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127125800-127131200	Weak transcription	Stomach Mucosa	stomach
2	chr5:127128200-127137400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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