Variant report

Variant	rs1361213
Chromosome Location	chr6:45887104-45887105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2095772	1.00[ASN][1000 genomes]
rs45615732	1.00[ASN][1000 genomes]
rs72870081	1.00[ASN][1000 genomes]
rs72870083	1.00[ASN][1000 genomes]
rs72870089	1.00[ASN][1000 genomes]
rs72870102	1.00[ASN][1000 genomes]
rs72871404	1.00[ASN][1000 genomes]
rs72871415	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72871419	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72871421	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72871427	1.00[ASN][1000 genomes]
rs72871430	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72871434	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72871437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1021917	chr6:45879064-45898314	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv2757165	chr6:45885642-45887421	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	n/a
4	esv2759424	chr6:45885642-45887421	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45866600-45898400	Weak transcription	Colonic Mucosa	Colon
2	chr6:45868800-45889600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:45879800-45889600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:45881200-45908000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:45882000-45889600	Weak transcription	Adipose Nuclei	Adipose
6	chr6:45882000-45889600	Weak transcription	Lung	lung
7	chr6:45882000-45889600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:45882200-45889600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:45882200-45890800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:45882200-45891200	Weak transcription	Placenta	Placenta
11	chr6:45882400-45898400	Weak transcription	Fetal Intestine Large	intestine
12	chr6:45883800-45887200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr6:45884400-45887200	Genic enhancers	Left Ventricle	heart
14	chr6:45884600-45890400	Weak transcription	Fetal Kidney	kidney
15	chr6:45884800-45887200	Enhancers	Right Ventricle	heart
16	chr6:45884800-45889600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:45885200-45889400	Weak transcription	HSMMtube	muscle
18	chr6:45885200-45890400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:45885200-45891200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:45885400-45889400	Weak transcription	Fetal Heart	heart
21	chr6:45885800-45889600	Weak transcription	Right Atrium	heart
22	chr6:45886000-45887400	Strong transcription	Fetal Intestine Small	intestine
23	chr6:45886200-45887400	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr6:45886400-45887200	Enhancers	H9 Cell Line	embryonic stem cell
25	chr6:45886600-45887200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:45886600-45888400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr6:45886800-45889600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr6:45886800-45892000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr6:45886800-45910600	Weak transcription	Psoas Muscle	Psoas
30	chr6:45887000-45888400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr6:45887000-45890400	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:45887000-45892000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links