Variant report

Variant	rs72871421
Chromosome Location	chr6:45878536-45878537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1361213	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2095772	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45615732	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72870081	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72870083	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72870089	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72870102	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72871404	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72871415	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72871419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72871427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72871430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72871434	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72871437	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45866400-45880000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:45866600-45898400	Weak transcription	Colonic Mucosa	Colon
3	chr6:45867800-45884200	Weak transcription	Fetal Heart	heart
4	chr6:45868800-45889600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:45869000-45879600	Weak transcription	Adipose Nuclei	Adipose
6	chr6:45870000-45881800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:45870200-45879600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:45870400-45880600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:45870800-45881200	Weak transcription	Placenta	Placenta
10	chr6:45871000-45878600	Weak transcription	Fetal Intestine Large	intestine
11	chr6:45871000-45879400	Weak transcription	Right Ventricle	heart
12	chr6:45871000-45879400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:45871000-45881800	Weak transcription	Lung	lung
14	chr6:45871200-45879200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:45871200-45884400	Weak transcription	Psoas Muscle	Psoas
16	chr6:45871200-45885600	Weak transcription	Spleen	Spleen
17	chr6:45876200-45882200	Strong transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:45876400-45881800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:45877200-45882000	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr6:45877400-45882400	Strong transcription	Left Ventricle	heart
21	chr6:45878000-45879600	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr6:45878400-45880000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:45878400-45880000	Strong transcription	Fetal Intestine Small	intestine
24	chr6:45878400-45882400	Strong transcription	Skeletal Muscle Male	skeletal muscle

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