Variant report

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1361213	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2095772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45615732	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72870081	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72870083	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72870089	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72870102	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72871404	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72871419	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72871421	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72871427	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72871430	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72871434	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72871437	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45866400-45880000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:45866600-45898400	Weak transcription	Colonic Mucosa	Colon
3	chr6:45867800-45884200	Weak transcription	Fetal Heart	heart
4	chr6:45868800-45889600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:45869000-45879600	Weak transcription	Adipose Nuclei	Adipose
6	chr6:45870000-45881800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:45870200-45879600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:45870400-45880600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:45870800-45881200	Weak transcription	Placenta	Placenta
10	chr6:45871000-45876200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:45871000-45878600	Weak transcription	Fetal Intestine Large	intestine
12	chr6:45871000-45879400	Weak transcription	Right Ventricle	heart
13	chr6:45871000-45879400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:45871000-45881800	Weak transcription	Lung	lung
15	chr6:45871200-45878400	Weak transcription	Fetal Intestine Small	intestine
16	chr6:45871200-45879200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:45871200-45884400	Weak transcription	Psoas Muscle	Psoas
18	chr6:45871200-45885600	Weak transcription	Spleen	Spleen
19	chr6:45871400-45877200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:45871400-45878400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:45872200-45874600	Weak transcription	Left Ventricle	heart

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