Variant report

Variant	rs72870102
Chromosome Location	chr6:45865772-45865773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1361213	1.00[ASN][1000 genomes]
rs2095772	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45615732	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72870081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72870083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72870089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72871404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72871415	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72871419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72871421	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72871427	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72871430	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72871434	1.00[ASN][1000 genomes]
rs72871437	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45863400-45866800	Weak transcription	Fetal Heart	heart
2	chr6:45863400-45869600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:45864600-45865800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:45864800-45867400	Weak transcription	Psoas Muscle	Psoas
5	chr6:45865000-45868400	Weak transcription	Osteobl	bone
6	chr6:45865000-45870000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:45865200-45867000	Weak transcription	Fetal Intestine Small	intestine
8	chr6:45865200-45870000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:45865200-45870000	Weak transcription	HSMMtube	muscle
10	chr6:45865400-45867000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:45865400-45867000	Weak transcription	Right Atrium	heart
12	chr6:45865400-45867400	Weak transcription	Left Ventricle	heart
13	chr6:45865400-45867400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:45865400-45868400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:45865400-45870000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:45865600-45867000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:45865600-45867800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:45865600-45868400	Weak transcription	NHDF-Ad	bronchial
19	chr6:45865600-45868800	Weak transcription	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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