Variant report

Variant	rs1362825
Chromosome Location	chr9:73595172-73595173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1411164	0.85[ASN][1000 genomes]
rs17520753	0.81[ASN][1000 genomes]
rs17521958	0.85[ASN][1000 genomes]
rs17593251	0.81[ASN][1000 genomes]
rs72731745	0.85[ASN][1000 genomes]
rs72731752	0.85[ASN][1000 genomes]
rs72731763	0.81[ASN][1000 genomes]
rs72731767	0.81[ASN][1000 genomes]
rs72731768	0.81[ASN][1000 genomes]
rs72731779	0.85[ASN][1000 genomes]
rs72731780	0.85[ASN][1000 genomes]
rs972386	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv6558	chr9:73589091-73600375	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv15365	chr9:73593904-73597196	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1792396	chr9:73594114-73595547	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1795264	chr9:73594114-73595547	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73594000-73595600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:73595000-73595600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:73595000-73595800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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