Variant report

Variant	rs17520753
Chromosome Location	chr9:73660688-73660689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1362825	0.81[ASN][1000 genomes]
rs1411164	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17521958	0.95[ASN][1000 genomes]
rs17593251	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731745	0.95[ASN][1000 genomes]
rs72731752	0.95[ASN][1000 genomes]
rs72731763	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731767	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731768	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731779	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72731780	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs972386	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042806	chr9:73613885-73686104	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73643800-73684000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:73651800-73663200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:73658200-73663200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:73658200-73663400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr9:73658800-73663400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr9:73660200-73661400	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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