Variant report

Variant	rs17521958
Chromosome Location	chr9:73730994-73730995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1362825	0.85[ASN][1000 genomes]
rs1411164	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17520753	0.95[ASN][1000 genomes]
rs17593251	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72731745	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72731752	0.90[ASN][1000 genomes]
rs72731763	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72731767	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72731768	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72731779	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731780	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731783	0.82[EUR][1000 genomes]
rs972386	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73720400-73735200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:73728000-73736000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:73728400-73734600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:73730000-73731400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr9:73730000-73733000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr9:73730000-73733400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr9:73730000-73733600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr9:73730200-73731000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:73730200-73734200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr9:73730400-73731200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:73730400-73731200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr9:73730600-73731000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr9:73730600-73731200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr9:73730600-73732400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:73730800-73732200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr9:73730800-73733800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:73730800-73736200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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