Variant report

Variant	rs1370
Chromosome Location	chr3:110854074-110854075
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:110850483..110852272-chr3:110853900..110855998,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12185974	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1801650	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1824709	0.89[EUR][1000 genomes]
rs56324569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56724510	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58112872	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61190717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6437943	0.83[EUR][1000 genomes]
rs73852384	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73852394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852401	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73852402	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854903	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854905	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73854911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854915	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854916	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854920	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73854921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854923	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73854926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854928	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854929	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7615927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7616280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7622397	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7642664	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9844779	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv1850918	chr3:110685181-110889974	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv591276	chr3:110822496-110854196	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	nsv877338	chr3:110824425-110860188	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	nsv1008308	chr3:110836281-110885834	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	nsv963531	chr3:110844919-110856568	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110816000-110873800	Weak transcription	Left Ventricle	heart
2	chr3:110816000-110893400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:110817400-110855200	Weak transcription	Pancreas	Pancrea
4	chr3:110819200-110857200	Weak transcription	NHLF	lung
5	chr3:110826800-110884200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:110829400-110893400	Weak transcription	HUVEC	blood vessel
7	chr3:110830600-110854200	Weak transcription	Right Ventricle	heart
8	chr3:110832000-110854600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:110832000-110854600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:110832000-110856600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:110832200-110881800	Weak transcription	Small Intestine	intestine
12	chr3:110832200-110892400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:110832400-110911200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr3:110833600-110855400	Weak transcription	Colon Smooth Muscle	Colon
15	chr3:110834000-110891800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr3:110835600-110929600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:110836200-110872800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr3:110837200-110854400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:110838400-110880200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:110842600-110911200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:110843000-110857400	Weak transcription	Adipose Nuclei	Adipose
22	chr3:110845400-110880000	Weak transcription	Fetal Kidney	kidney
23	chr3:110846000-110863600	Weak transcription	NHDF-Ad	bronchial
24	chr3:110847000-110854200	Weak transcription	Osteobl	bone
25	chr3:110847000-110873800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr3:110847000-110911400	Weak transcription	Fetal Muscle Leg	muscle
27	chr3:110847200-110873800	Weak transcription	Fetal Intestine Small	intestine
28	chr3:110847200-110874000	Weak transcription	Fetal Stomach	stomach
29	chr3:110848000-110855800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr3:110848000-110872800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr3:110848000-110873800	Weak transcription	Fetal Intestine Large	intestine
32	chr3:110848200-110872600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr3:110848200-110891800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr3:110848400-110879800	Weak transcription	Placenta	Placenta
35	chr3:110852400-110854400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:110852400-110855400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr3:110852800-110855600	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr3:110852800-110857200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr3:110853000-110856800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr3:110853000-110860600	Weak transcription	Fetal Heart	heart
41	chr3:110853000-110872800	Weak transcription	Liver	Liver
42	chr3:110853000-110880000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr3:110853000-110919600	Weak transcription	Fetal Brain Male	brain
44	chr3:110853200-110865800	Weak transcription	Dnd41	blood
45	chr3:110853200-110866000	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr3:110853200-110866400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr3:110853200-110867200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr3:110853200-110870000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr3:110853200-110870000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr3:110853200-110870600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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