Variant report

Variant	rs73854922
Chromosome Location	chr3:110885763-110885764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12185974	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1801650	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1824709	0.89[EUR][1000 genomes]
rs56324569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56724510	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58112872	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61190717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6437943	0.83[EUR][1000 genomes]
rs73852384	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73852394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852401	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73852402	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854903	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854905	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73854911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854915	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854916	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854920	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73854921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854923	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73854926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854928	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854929	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7615927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7616280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7622397	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7642664	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9844779	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv1850918	chr3:110685181-110889974	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1008308	chr3:110836281-110885834	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv963503	chr3:110882589-110888339	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv829675	chr3:110885605-111101858	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110816000-110893400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:110829400-110893400	Weak transcription	HUVEC	blood vessel
3	chr3:110832200-110892400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:110832400-110911200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:110834000-110891800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:110835600-110929600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:110842600-110911200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:110847000-110911400	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:110848200-110891800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:110853000-110919600	Weak transcription	Fetal Brain Male	brain
11	chr3:110853200-110897000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:110853200-110911000	Weak transcription	NH-A	brain
13	chr3:110857800-110892000	Weak transcription	Adipose Nuclei	Adipose
14	chr3:110864200-110891800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr3:110869400-110929000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr3:110870200-110891800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:110871000-110914200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:110871200-110896400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr3:110871600-110889600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:110871600-110892200	Weak transcription	NHLF	lung
21	chr3:110872000-110889800	Weak transcription	Pancreas	Pancrea
22	chr3:110872200-110913800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr3:110872600-110918800	Weak transcription	Colon Smooth Muscle	Colon
24	chr3:110872800-110893400	Weak transcription	Gastric	stomach
25	chr3:110872800-110896000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr3:110873800-110889400	Weak transcription	Aorta	Aorta
27	chr3:110874200-110893400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr3:110874200-110893400	Weak transcription	Fetal Intestine Small	intestine
29	chr3:110874200-110894200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr3:110874200-110912000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr3:110874400-110911800	Weak transcription	Left Ventricle	heart
32	chr3:110874800-110889000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:110874800-110891600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr3:110874800-110913000	Weak transcription	Fetal Muscle Trunk	muscle
35	chr3:110875000-110889400	Weak transcription	Liver	Liver
36	chr3:110875000-110891600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr3:110875200-110897600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr3:110877800-110891600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr3:110878800-110888400	Weak transcription	NHDF-Ad	bronchial
40	chr3:110880600-110886400	Weak transcription	Placenta	Placenta
41	chr3:110880600-110889600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:110880600-110892000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr3:110880600-110903600	Weak transcription	Fetal Kidney	kidney
44	chr3:110880800-110889000	Weak transcription	Dnd41	blood
45	chr3:110880800-110890800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr3:110880800-110892800	Weak transcription	Fetal Stomach	stomach
47	chr3:110881000-110886400	Weak transcription	Fetal Lung	lung
48	chr3:110881000-110889800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr3:110881000-110891800	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr3:110881000-110891800	Weak transcription	HSMMtube	muscle

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