Variant report

Variant	rs1824709
Chromosome Location	chr3:110776561-110776562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12185974	0.89[EUR][1000 genomes]
rs1370	0.89[EUR][1000 genomes]
rs1801650	0.89[EUR][1000 genomes]
rs56324569	0.89[EUR][1000 genomes]
rs56724510	1.00[EUR][1000 genomes]
rs58112872	0.89[EUR][1000 genomes]
rs61190717	0.89[EUR][1000 genomes]
rs6437943	0.93[EUR][1000 genomes]
rs73852384	1.00[EUR][1000 genomes]
rs73852394	0.89[EUR][1000 genomes]
rs73852397	0.89[EUR][1000 genomes]
rs73852398	0.89[EUR][1000 genomes]
rs73852399	0.89[EUR][1000 genomes]
rs73852401	0.83[EUR][1000 genomes]
rs73852402	0.89[EUR][1000 genomes]
rs73854903	0.89[EUR][1000 genomes]
rs73854905	0.89[EUR][1000 genomes]
rs73854910	0.85[EUR][1000 genomes]
rs73854911	0.89[EUR][1000 genomes]
rs73854912	0.89[EUR][1000 genomes]
rs73854913	0.89[EUR][1000 genomes]
rs73854914	0.89[EUR][1000 genomes]
rs73854915	0.89[EUR][1000 genomes]
rs73854916	0.89[EUR][1000 genomes]
rs73854919	0.89[EUR][1000 genomes]
rs73854920	0.83[EUR][1000 genomes]
rs73854921	0.89[EUR][1000 genomes]
rs73854922	0.89[EUR][1000 genomes]
rs73854923	0.80[EUR][1000 genomes]
rs73854926	0.89[EUR][1000 genomes]
rs73854927	0.89[EUR][1000 genomes]
rs73854928	0.89[EUR][1000 genomes]
rs73854929	0.89[EUR][1000 genomes]
rs7615927	0.89[EUR][1000 genomes]
rs7616280	0.89[EUR][1000 genomes]
rs7622397	0.89[EUR][1000 genomes]
rs7642664	1.00[EUR][1000 genomes]
rs9844779	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv1850918	chr3:110685181-110889974	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110765000-110788800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:110774000-110782000	Weak transcription	Ovary	ovary
3	chr3:110775800-110786800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:110776200-110776800	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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