Variant report

Variant	rs73852401
Chromosome Location	chr3:110809388-110809389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12185974	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1370	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1801650	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1824709	0.83[EUR][1000 genomes]
rs56324569	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56724510	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58112872	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61190717	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73852384	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73852394	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73852397	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73852398	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73852399	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73852402	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73854903	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73854905	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73854910	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73854911	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73854912	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73854913	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73854914	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73854915	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73854916	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73854919	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73854920	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73854921	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73854922	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73854923	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73854926	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73854927	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73854928	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73854929	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7615927	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7616280	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7622397	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7642664	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv1850918	chr3:110685181-110889974	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110794400-110813600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:110799800-110820600	Weak transcription	A549	lung
3	chr3:110800200-110812400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:110800200-110817200	Weak transcription	Gastric	stomach
5	chr3:110802000-110822600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:110804000-110817200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:110804200-110814200	Weak transcription	Fetal Intestine Large	intestine
8	chr3:110804800-110811400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:110805000-110833600	Weak transcription	NHDF-Ad	bronchial
10	chr3:110805600-110810800	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:110806600-110809400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr3:110807000-110813200	Weak transcription	Fetal Intestine Small	intestine
13	chr3:110807000-110815400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:110807200-110811600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:110807200-110813200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr3:110807200-110813400	Weak transcription	Ovary	ovary
17	chr3:110807200-110814600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:110807200-110815400	Weak transcription	Psoas Muscle	Psoas
19	chr3:110807200-110822600	Weak transcription	Fetal Lung	lung
20	chr3:110807400-110813200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr3:110807400-110815200	Weak transcription	Fetal Heart	heart
22	chr3:110807600-110813400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:110807800-110811200	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr3:110807800-110812600	Weak transcription	Dnd41	blood
25	chr3:110808600-110809400	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr3:110808600-110810200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr3:110808600-110817200	Weak transcription	Small Intestine	intestine
28	chr3:110808800-110813200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:110808800-110813600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:110809000-110810400	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr3:110809200-110809400	Enhancers	Fetal Brain Male	brain

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