Variant report
| Variant | rs1371290 |
|---|---|
| Chromosome Location | chr1:213673992-213673993 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:213673826..213676574-chr1:213678134..213680057,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs1025765 | 0.97[EUR][1000 genomes] |
| rs105959 | 0.83[EUR][1000 genomes] |
| rs10864047 | 0.82[EUR][1000 genomes] |
| rs10864048 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11120139 | 0.82[EUR][1000 genomes] |
| rs11120146 | 0.95[EUR][1000 genomes] |
| rs11120147 | 0.95[EUR][1000 genomes] |
| rs12128616 | 0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12746075 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1371286 | 0.82[EUR][1000 genomes] |
| rs1566357 | 0.88[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1566358 | 0.82[EUR][1000 genomes] |
| rs2165130 | 0.95[EUR][1000 genomes] |
| rs2165133 | 0.95[EUR][1000 genomes] |
| rs2173482 | 0.95[EUR][1000 genomes] |
| rs320374 | 0.94[EUR][1000 genomes] |
| rs451083 | 0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832525 | chr1:213580476-213782815 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv549179 | chr1:213641943-213674732 | Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:213673000-213678200 | Weak transcription | Pancreas | Pancrea |
