Variant report

Variant	rs12128616
Chromosome Location	chr1:213664490-213664491
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1025765	0.93[EUR][1000 genomes]
rs105959	0.86[EUR][1000 genomes]
rs10864047	0.84[EUR][1000 genomes]
rs10864048	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11120139	0.82[CHB][hapmap];0.84[EUR][1000 genomes]
rs11120146	0.91[EUR][1000 genomes]
rs11120147	0.91[EUR][1000 genomes]
rs12045497	0.92[CEU][hapmap];0.83[CHB][hapmap]
rs12746075	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1371286	0.84[EUR][1000 genomes]
rs1371290	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1566357	0.92[CEU][hapmap];0.82[CHB][hapmap];0.93[EUR][1000 genomes]
rs1566358	0.82[CHB][hapmap];0.84[EUR][1000 genomes]
rs2165130	0.91[EUR][1000 genomes]
rs2165133	0.91[EUR][1000 genomes]
rs2173482	0.91[EUR][1000 genomes]
rs320374	0.91[EUR][1000 genomes]
rs451083	0.91[EUR][1000 genomes]
rs4655427	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv549179	chr1:213641943-213674732	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213664000-213667600	Enhancers	HepG2	liver
2	chr1:213664200-213665600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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