Variant report
| Variant | rs12045497 |
|---|---|
| Chromosome Location | chr1:213663708-213663709 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:213662347..213664389-chr1:213667311..213670072,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1025765 | 0.88[EUR][1000 genomes] |
| rs105959 | 0.82[EUR][1000 genomes] |
| rs10864047 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10864048 | 0.82[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11120139 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11120146 | 0.87[EUR][1000 genomes] |
| rs11120147 | 0.87[EUR][1000 genomes] |
| rs12128616 | 0.92[CEU][hapmap];0.83[CHB][hapmap];0.93[EUR][1000 genomes] |
| rs12746075 | 0.88[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1371286 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1371290 | 0.88[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1566357 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1566358 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2165130 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2165133 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2173482 | 0.87[EUR][1000 genomes] |
| rs320374 | 0.87[EUR][1000 genomes] |
| rs451083 | 0.87[EUR][1000 genomes] |
| rs4655427 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs6666298 | 0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832525 | chr1:213580476-213782815 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv549179 | chr1:213641943-213674732 | Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
