Variant report

Variant	rs10864048
Chromosome Location	chr1:213673691-213673692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1025765	0.97[EUR][1000 genomes]
rs105959	0.83[EUR][1000 genomes]
rs10864047	0.82[EUR][1000 genomes]
rs11120139	0.82[CHB][hapmap];0.91[CHD][hapmap];0.82[EUR][1000 genomes]
rs11120146	0.95[EUR][1000 genomes]
rs11120147	0.95[EUR][1000 genomes]
rs12045497	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs12128616	0.92[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12746075	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1371286	0.82[EUR][1000 genomes]
rs1371290	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1566357	0.92[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1566358	0.82[CHB][hapmap];0.91[CHD][hapmap];0.82[EUR][1000 genomes]
rs2165130	0.95[EUR][1000 genomes]
rs2165133	0.95[EUR][1000 genomes]
rs2173482	0.95[EUR][1000 genomes]
rs320374	0.94[EUR][1000 genomes]
rs451083	0.94[EUR][1000 genomes]
rs4655427	0.91[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv549179	chr1:213641943-213674732	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213673000-213678200	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links