Variant report

Variant	rs1384932
Chromosome Location	chr3:69419635-69419636
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12107294	1.00[EUR][1000 genomes]
rs13323929	1.00[EUR][1000 genomes]
rs17005573	1.00[EUR][1000 genomes]
rs17005591	1.00[EUR][1000 genomes]
rs59851645	1.00[EUR][1000 genomes]
rs6549210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6549212	1.00[EUR][1000 genomes]
rs72934847	1.00[EUR][1000 genomes]
rs72934854	1.00[EUR][1000 genomes]
rs72934855	1.00[EUR][1000 genomes]
rs72934857	1.00[EUR][1000 genomes]
rs72940786	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7633864	1.00[EUR][1000 genomes]
rs7639924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs922947	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs964552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9830380	1.00[EUR][1000 genomes]
rs9849228	1.00[EUR][1000 genomes]
rs9861534	1.00[EUR][1000 genomes]
rs9868554	1.00[EUR][1000 genomes]
rs9878971	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv520818	chr3:69401248-69421495	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2760780	chr3:69413876-69513947	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69416600-69420400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:69416800-69419800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:69416800-69420400	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr3:69416800-69420600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr3:69417000-69420600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr3:69417000-69420600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr3:69417200-69420600	Flanking Active TSS	Dnd41	blood
8	chr3:69417200-69421000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:69417400-69420800	Enhancers	Fetal Lung	lung
10	chr3:69417800-69420800	Weak transcription	Aorta	Aorta
11	chr3:69418600-69419800	Enhancers	Brain Germinal Matrix	brain
12	chr3:69418800-69420000	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr3:69418800-69420200	Enhancers	Primary B cells from peripheral blood	blood
14	chr3:69418800-69420200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:69418800-69420600	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr3:69418800-69421400	Enhancers	Fetal Heart	heart
17	chr3:69419000-69419800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:69419000-69419800	Flanking Active TSS	HMEC	breast
19	chr3:69419000-69419800	Flanking Active TSS	HUVEC	blood vessel
20	chr3:69419000-69419800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr3:69419000-69420000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:69419000-69420000	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr3:69419000-69420200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr3:69419000-69420600	Flanking Active TSS	NHEK	skin
25	chr3:69419000-69421400	Enhancers	Brain Angular Gyrus	brain
26	chr3:69419200-69419800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
27	chr3:69419200-69419800	Flanking Active TSS	Primary T cells from cord blood	blood
28	chr3:69419200-69419800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr3:69419200-69419800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:69419200-69419800	Flanking Active TSS	Thymus	Thymus
31	chr3:69419200-69420000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr3:69419200-69420000	Enhancers	Fetal Brain Male	brain
33	chr3:69419200-69420400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr3:69419200-69420600	Enhancers	Primary T cells fromperipheralblood	blood
35	chr3:69419200-69421000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr3:69419200-69421200	Enhancers	Placenta	Placenta
37	chr3:69419400-69419800	Flanking Active TSS	Primary B cells from cord blood	blood
38	chr3:69419400-69419800	Flanking Active TSS	Brain Anterior Caudate	brain
39	chr3:69419400-69419800	Active TSS	Brain Cingulate Gyrus	brain
40	chr3:69419400-69419800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
41	chr3:69419400-69419800	Flanking Active TSS	Duodenum Mucosa	Duodenum
42	chr3:69419400-69419800	Enhancers	Fetal Brain Female	brain
43	chr3:69419400-69419800	Enhancers	Fetal Muscle Leg	muscle
44	chr3:69419400-69419800	Flanking Active TSS	Right Atrium	heart
45	chr3:69419400-69419800	Active TSS	Right Ventricle	heart
46	chr3:69419400-69419800	Flanking Active TSS	HSMM	muscle
47	chr3:69419400-69420000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr3:69419400-69420000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr3:69419400-69420000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr3:69419400-69420000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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