Variant report

Variant	rs6549212
Chromosome Location	chr3:69421898-69421899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11128124	1.00[AMR][1000 genomes]
rs11920822	1.00[AMR][1000 genomes]
rs11925020	1.00[AMR][1000 genomes]
rs12107294	1.00[EUR][1000 genomes]
rs13323929	1.00[EUR][1000 genomes]
rs1384932	1.00[EUR][1000 genomes]
rs1483894	1.00[AMR][1000 genomes]
rs17005573	1.00[EUR][1000 genomes]
rs17005591	1.00[EUR][1000 genomes]
rs1809486	1.00[AMR][1000 genomes]
rs1843047	1.00[AMR][1000 genomes]
rs2007561	1.00[AMR][1000 genomes]
rs2128973	1.00[AMR][1000 genomes]
rs2314988	1.00[AMR][1000 genomes]
rs34772648	1.00[AMR][1000 genomes]
rs4855306	1.00[AMR][1000 genomes]
rs4855392	1.00[AMR][1000 genomes]
rs4855393	1.00[AMR][1000 genomes]
rs59851645	1.00[EUR][1000 genomes]
rs6549199	1.00[AMR][1000 genomes]
rs6549210	1.00[EUR][1000 genomes]
rs6549211	1.00[YRI][hapmap]
rs6769290	1.00[AMR][1000 genomes]
rs6783290	1.00[AMR][1000 genomes]
rs6794191	1.00[AMR][1000 genomes]
rs72934847	1.00[EUR][1000 genomes]
rs72934854	1.00[EUR][1000 genomes]
rs72934855	1.00[EUR][1000 genomes]
rs72934857	1.00[EUR][1000 genomes]
rs72937850	1.00[AMR][1000 genomes]
rs72940786	1.00[EUR][1000 genomes]
rs7633864	1.00[EUR][1000 genomes]
rs7639924	1.00[EUR][1000 genomes]
rs7645568	1.00[AMR][1000 genomes]
rs7649640	1.00[AMR][1000 genomes]
rs922947	1.00[EUR][1000 genomes]
rs964552	1.00[EUR][1000 genomes]
rs9830380	1.00[EUR][1000 genomes]
rs9849228	1.00[EUR][1000 genomes]
rs9861534	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9868554	1.00[EUR][1000 genomes]
rs9878971	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2760780	chr3:69413876-69513947	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69419800-69423800	Weak transcription	Fetal Brain Female	brain
2	chr3:69420000-69422200	Enhancers	Brain Hippocampus Middle	brain
3	chr3:69420000-69427400	Weak transcription	Pancreas	Pancrea
4	chr3:69420400-69426600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr3:69420600-69424600	Enhancers	Dnd41	blood
6	chr3:69420600-69433600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:69420800-69422200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:69421000-69425400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:69421000-69433600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:69421200-69423600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr3:69421200-69428000	Weak transcription	HSMMtube	muscle
12	chr3:69421400-69423000	Weak transcription	Fetal Heart	heart
13	chr3:69421400-69424800	Weak transcription	Brain Substantia Nigra	brain
14	chr3:69421400-69425400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:69421400-69426000	Weak transcription	Brain Angular Gyrus	brain
16	chr3:69421400-69426000	Weak transcription	Fetal Thymus	thymus
17	chr3:69421400-69427400	Weak transcription	HSMM	muscle
18	chr3:69421400-69428800	Weak transcription	Brain Anterior Caudate	brain
19	chr3:69421400-69428800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr3:69421400-69429000	Weak transcription	Spleen	Spleen
21	chr3:69421400-69429800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:69421400-69430400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:69421400-69432600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:69421400-69433400	Weak transcription	Aorta	Aorta
25	chr3:69421400-69433800	Weak transcription	Lung	lung
26	chr3:69421400-69433800	Weak transcription	Right Atrium	heart
27	chr3:69421600-69423600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:69421600-69429000	Weak transcription	NHEK	skin
29	chr3:69421600-69433600	Weak transcription	HMEC	breast
30	chr3:69421800-69422200	Weak transcription	Thymus	Thymus
31	chr3:69421800-69422400	Enhancers	Fetal Lung	lung

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