Variant report

Variant	rs7645568
Chromosome Location	chr3:69390377-69390378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11128124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11920822	1.00[AMR][1000 genomes]
rs11925020	1.00[AMR][1000 genomes]
rs1483894	1.00[AMR][1000 genomes]
rs1809486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1843047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2007561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2128973	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2314988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34772648	1.00[AMR][1000 genomes]
rs4855306	1.00[AMR][1000 genomes]
rs4855392	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4855393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6549199	1.00[AMR][1000 genomes]
rs6549212	1.00[AMR][1000 genomes]
rs6769290	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6783290	1.00[AMR][1000 genomes]
rs6794191	1.00[AMR][1000 genomes]
rs72937850	1.00[AMR][1000 genomes]
rs7649640	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876935	chr3:69307942-69401248	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv1800315	chr3:69374729-69414587	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69372200-69403800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:69378400-69390600	Weak transcription	Thymus	Thymus
3	chr3:69378400-69400600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:69380600-69393200	Weak transcription	HSMM	muscle
5	chr3:69380800-69390600	Weak transcription	Fetal Lung	lung
6	chr3:69384400-69390600	Weak transcription	Fetal Heart	heart
7	chr3:69384400-69390800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:69386000-69400200	Weak transcription	NHEK	skin
9	chr3:69387800-69393600	Enhancers	Brain Hippocampus Middle	brain
10	chr3:69388200-69391800	Enhancers	Brain Substantia Nigra	brain
11	chr3:69388600-69391000	Enhancers	Spleen	Spleen
12	chr3:69389000-69391800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:69389000-69400800	Weak transcription	Aorta	Aorta
14	chr3:69389200-69390400	Weak transcription	Right Atrium	heart
15	chr3:69389200-69390600	Weak transcription	Fetal Stomach	stomach
16	chr3:69389200-69392200	Weak transcription	Left Ventricle	heart
17	chr3:69389400-69390400	Weak transcription	Fetal Thymus	thymus
18	chr3:69389400-69391200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr3:69389400-69400600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:69389600-69390400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr3:69389600-69391400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:69389800-69390600	Weak transcription	Lung	lung
23	chr3:69389800-69390800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr3:69389800-69391000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:69389800-69391800	Enhancers	Dnd41	blood
26	chr3:69389800-69392200	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr3:69389800-69400200	Weak transcription	HUVEC	blood vessel
28	chr3:69390000-69390400	Weak transcription	Brain Angular Gyrus	brain
29	chr3:69390000-69390400	Weak transcription	Brain Anterior Caudate	brain

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