Variant report

Variant	rs34772648
Chromosome Location	chr3:69458917-69458918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:69373623..69374172-chr3:69458720..69460070,3	MCF-7	breast:
2	chr3:69458125..69461100-chr3:69465015..69466621,2	K562	blood:
3	chr3:69451514..69454199-chr3:69456879..69459994,4	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11128124	1.00[AMR][1000 genomes]
rs11920822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11925020	1.00[AMR][1000 genomes]
rs1483894	1.00[AMR][1000 genomes]
rs1809486	1.00[AMR][1000 genomes]
rs1843047	1.00[AMR][1000 genomes]
rs2007561	1.00[AMR][1000 genomes]
rs2128973	1.00[AMR][1000 genomes]
rs2314988	1.00[AMR][1000 genomes]
rs4855306	1.00[AMR][1000 genomes]
rs4855392	1.00[AMR][1000 genomes]
rs4855393	1.00[AMR][1000 genomes]
rs6549199	1.00[AMR][1000 genomes]
rs6549212	1.00[AMR][1000 genomes]
rs6769290	1.00[AMR][1000 genomes]
rs6783290	1.00[AMR][1000 genomes]
rs6794191	1.00[AMR][1000 genomes]
rs72937850	1.00[AMR][1000 genomes]
rs7645568	1.00[AMR][1000 genomes]
rs7649640	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2760780	chr3:69413876-69513947	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426797	chr3:69433086-69777229	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69450600-69461400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:69454800-69459000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr3:69455800-69459600	Enhancers	Brain Angular Gyrus	brain
4	chr3:69455800-69461400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:69456000-69459400	Weak transcription	Fetal Brain Male	brain
6	chr3:69456200-69459000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:69457000-69459200	Weak transcription	Placenta	Placenta
8	chr3:69457000-69470800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:69457400-69459200	Enhancers	Brain Hippocampus Middle	brain
10	chr3:69457400-69459200	Enhancers	Brain Substantia Nigra	brain
11	chr3:69457400-69459800	Enhancers	Fetal Heart	heart
12	chr3:69457400-69460400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr3:69457600-69459600	Enhancers	Brain Cingulate Gyrus	brain
14	chr3:69457800-69459000	Enhancers	Adipose Nuclei	Adipose
15	chr3:69457800-69459800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr3:69458000-69459600	Enhancers	Fetal Lung	lung
17	chr3:69458200-69459600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:69458200-69461400	Enhancers	HSMM	muscle
19	chr3:69458400-69459200	Enhancers	HMEC	breast
20	chr3:69458400-69459600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr3:69458400-69459600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr3:69458400-69459600	Enhancers	Right Ventricle	heart
23	chr3:69458600-69459600	Enhancers	Fetal Brain Female	brain
24	chr3:69458600-69459600	Enhancers	Fetal Thymus	thymus
25	chr3:69458600-69459800	Enhancers	Thymus	Thymus
26	chr3:69458600-69460600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr3:69458600-69460600	Enhancers	HUVEC	blood vessel
28	chr3:69458800-69459000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr3:69458800-69459000	Enhancers	Liver	Liver
30	chr3:69458800-69459000	Enhancers	Brain Anterior Caudate	brain
31	chr3:69458800-69459200	Weak transcription	Fetal Muscle Leg	muscle
32	chr3:69458800-69459400	Weak transcription	Left Ventricle	heart
33	chr3:69458800-69459400	Weak transcription	Spleen	Spleen
34	chr3:69458800-69459600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr3:69458800-69459600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr3:69458800-69459600	Enhancers	Colonic Mucosa	Colon
37	chr3:69458800-69459600	Enhancers	Fetal Stomach	stomach
38	chr3:69458800-69459600	Enhancers	Right Atrium	heart
39	chr3:69458800-69459800	Enhancers	Dnd41	blood
40	chr3:69458800-69459800	Genic enhancers	NHEK	skin
41	chr3:69458800-69460200	Weak transcription	HSMMtube	muscle

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