Variant report

Variant	rs6794191
Chromosome Location	chr3:69356808-69356809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69221873..69224471-chr3:69354670..69357098,2	MCF-7	breast:
2	chr3:69210554..69213653-chr3:69354027..69357404,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11128124	1.00[AMR][1000 genomes]
rs11920822	1.00[AMR][1000 genomes]
rs11925020	1.00[AMR][1000 genomes]
rs1483894	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1809486	1.00[AMR][1000 genomes]
rs1843047	1.00[AMR][1000 genomes]
rs2007561	1.00[AMR][1000 genomes]
rs2128973	1.00[AMR][1000 genomes]
rs2314988	1.00[AMR][1000 genomes]
rs34772648	1.00[AMR][1000 genomes]
rs4855306	1.00[AMR][1000 genomes]
rs4855392	1.00[AMR][1000 genomes]
rs4855393	1.00[AMR][1000 genomes]
rs6549199	1.00[AMR][1000 genomes]
rs6549212	1.00[AMR][1000 genomes]
rs6769290	1.00[AMR][1000 genomes]
rs6783290	1.00[AMR][1000 genomes]
rs72937850	1.00[AMR][1000 genomes]
rs7645568	1.00[AMR][1000 genomes]
rs7649640	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876935	chr3:69307942-69401248	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69339600-69357200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:69343800-69362200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:69344000-69370000	Weak transcription	Fetal Brain Male	brain
4	chr3:69344000-69370000	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:69347800-69357600	Weak transcription	Fetal Stomach	stomach
6	chr3:69348000-69369400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:69349200-69368800	Weak transcription	Fetal Brain Female	brain
8	chr3:69350000-69374200	Weak transcription	Aorta	Aorta
9	chr3:69350600-69357200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:69352400-69357000	Weak transcription	Dnd41	blood
11	chr3:69353800-69357400	Enhancers	Brain Anterior Caudate	brain
12	chr3:69354600-69357600	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr3:69355200-69357800	Enhancers	Brain Substantia Nigra	brain
14	chr3:69355200-69359000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr3:69355400-69357400	Enhancers	Brain Cingulate Gyrus	brain
16	chr3:69355600-69357600	Enhancers	Brain Angular Gyrus	brain
17	chr3:69355600-69359400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr3:69355800-69361800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:69356000-69357000	Weak transcription	HMEC	breast
20	chr3:69356000-69357200	Enhancers	Stomach Smooth Muscle	stomach
21	chr3:69356000-69361600	Strong transcription	NHEK	skin
22	chr3:69356000-69373200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr3:69356200-69357200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr3:69356200-69357800	Weak transcription	HUVEC	blood vessel
25	chr3:69356200-69359000	Weak transcription	HSMM	muscle
26	chr3:69356200-69368800	Weak transcription	Fetal Heart	heart
27	chr3:69356200-69369800	Weak transcription	Fetal Lung	lung
28	chr3:69356400-69357000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr3:69356400-69357000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:69356400-69357600	Weak transcription	Spleen	Spleen
31	chr3:69356400-69361800	Weak transcription	HSMMtube	muscle
32	chr3:69356400-69371000	Weak transcription	Placenta	Placenta
33	chr3:69356400-69372000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr3:69356600-69359200	Strong transcription	Lung	lung
35	chr3:69356800-69357000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:69356800-69358200	ZNF genes & repeats	Fetal Thymus	thymus
37	chr3:69356800-69358600	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr3:69356800-69359000	Weak transcription	Brain Hippocampus Middle	brain
39	chr3:69356800-69359400	Strong transcription	Thymus	Thymus
40	chr3:69356800-69361800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr3:69356800-69362600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr3:69356800-69362800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr3:69356800-69362800	Strong transcription	Monocytes-CD14+_RO01746	blood

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