Variant report

Variant	rs9868554
Chromosome Location	chr3:69347784-69347785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69343993..69345618-chr3:69347153..69349609,2	MCF-7	breast:
2	chr3:69337831..69342089-chr3:69345739..69348837,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12107294	1.00[EUR][1000 genomes]
rs13323929	1.00[EUR][1000 genomes]
rs1384932	1.00[EUR][1000 genomes]
rs17005573	1.00[EUR][1000 genomes]
rs17005591	1.00[EUR][1000 genomes]
rs59851645	1.00[EUR][1000 genomes]
rs6549210	1.00[EUR][1000 genomes]
rs6549212	1.00[EUR][1000 genomes]
rs72934847	1.00[EUR][1000 genomes]
rs72934854	1.00[EUR][1000 genomes]
rs72934855	1.00[EUR][1000 genomes]
rs72934857	1.00[EUR][1000 genomes]
rs72940786	1.00[EUR][1000 genomes]
rs7633864	1.00[EUR][1000 genomes]
rs7639924	1.00[EUR][1000 genomes]
rs922947	1.00[EUR][1000 genomes]
rs964552	1.00[EUR][1000 genomes]
rs9830380	1.00[EUR][1000 genomes]
rs9849228	1.00[EUR][1000 genomes]
rs9861534	1.00[EUR][1000 genomes]
rs9878971	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876935	chr3:69307942-69401248	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69331600-69355400	Weak transcription	Adipose Nuclei	Adipose
2	chr3:69338200-69355800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:69338800-69350400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:69339600-69355800	Weak transcription	Spleen	Spleen
5	chr3:69339600-69357200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:69340000-69351600	Enhancers	Fetal Heart	heart
7	chr3:69342000-69355400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:69342600-69351800	Weak transcription	Brain Germinal Matrix	brain
9	chr3:69343600-69348200	Strong transcription	HUVEC	blood vessel
10	chr3:69343600-69348600	Weak transcription	Fetal Brain Female	brain
11	chr3:69343600-69349600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr3:69343800-69353800	Weak transcription	Brain Angular Gyrus	brain
13	chr3:69343800-69362200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr3:69344000-69348800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:69344000-69348800	Weak transcription	HSMMtube	muscle
16	chr3:69344000-69349800	Weak transcription	Left Ventricle	heart
17	chr3:69344000-69352000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr3:69344000-69353800	Weak transcription	Brain Anterior Caudate	brain
19	chr3:69344000-69355400	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:69344000-69355400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr3:69344000-69370000	Weak transcription	Fetal Brain Male	brain
22	chr3:69344000-69370000	Weak transcription	Fetal Muscle Leg	muscle
23	chr3:69344200-69348000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr3:69344200-69351800	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr3:69344200-69352000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:69344200-69353800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:69344200-69353800	Weak transcription	Fetal Intestine Small	intestine
28	chr3:69344400-69349000	Weak transcription	Fetal Thymus	thymus
29	chr3:69344400-69351800	Strong transcription	Fetal Lung	lung
30	chr3:69344600-69348200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:69344600-69348200	Weak transcription	Primary T cells from cord blood	blood
32	chr3:69344600-69355800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr3:69344800-69349000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:69344800-69354000	Strong transcription	NHEK	skin
35	chr3:69345000-69349600	Strong transcription	HMEC	breast
36	chr3:69345000-69351800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr3:69345000-69351800	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr3:69345200-69349000	Strong transcription	HSMM	muscle
39	chr3:69345200-69351800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr3:69345200-69352400	Strong transcription	Dnd41	blood
41	chr3:69346200-69348400	Strong transcription	Aorta	Aorta
42	chr3:69346400-69349200	Enhancers	Brain Hippocampus Middle	brain
43	chr3:69346600-69350600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr3:69346800-69351400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr3:69346800-69356800	Weak transcription	Thymus	Thymus
46	chr3:69347000-69353000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr3:69347200-69348000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr3:69347200-69348400	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr3:69347200-69351600	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr3:69347400-69347800	Genic enhancers	Brain Cingulate Gyrus	brain

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