Variant report

Variant	rs72934857
Chromosome Location	chr3:69352313-69352314
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12107294	1.00[EUR][1000 genomes]
rs13323929	1.00[EUR][1000 genomes]
rs1384932	1.00[EUR][1000 genomes]
rs17005573	1.00[EUR][1000 genomes]
rs17005591	1.00[EUR][1000 genomes]
rs59851645	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6549210	1.00[EUR][1000 genomes]
rs6549212	1.00[EUR][1000 genomes]
rs72934847	1.00[EUR][1000 genomes]
rs72934854	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72934855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72940786	1.00[EUR][1000 genomes]
rs7633864	1.00[EUR][1000 genomes]
rs7639924	1.00[EUR][1000 genomes]
rs922947	1.00[EUR][1000 genomes]
rs964552	1.00[EUR][1000 genomes]
rs9830380	1.00[EUR][1000 genomes]
rs9849228	1.00[EUR][1000 genomes]
rs9861534	1.00[EUR][1000 genomes]
rs9868554	1.00[EUR][1000 genomes]
rs9878971	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876935	chr3:69307942-69401248	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69331600-69355400	Weak transcription	Adipose Nuclei	Adipose
2	chr3:69338200-69355800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:69339600-69355800	Weak transcription	Spleen	Spleen
4	chr3:69339600-69357200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:69342000-69355400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:69343800-69353800	Weak transcription	Brain Angular Gyrus	brain
7	chr3:69343800-69362200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr3:69344000-69353800	Weak transcription	Brain Anterior Caudate	brain
9	chr3:69344000-69355400	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:69344000-69355400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:69344000-69370000	Weak transcription	Fetal Brain Male	brain
12	chr3:69344000-69370000	Weak transcription	Fetal Muscle Leg	muscle
13	chr3:69344200-69353800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:69344200-69353800	Weak transcription	Fetal Intestine Small	intestine
15	chr3:69344600-69355800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:69344800-69354000	Strong transcription	NHEK	skin
17	chr3:69345200-69352400	Strong transcription	Dnd41	blood
18	chr3:69346800-69356800	Weak transcription	Thymus	Thymus
19	chr3:69347000-69353000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:69347800-69357600	Weak transcription	Fetal Stomach	stomach
21	chr3:69348000-69356600	Weak transcription	Lung	lung
22	chr3:69348000-69369400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr3:69348800-69354600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr3:69349200-69354000	Weak transcription	Osteobl	bone
25	chr3:69349200-69355400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr3:69349200-69368800	Weak transcription	Fetal Brain Female	brain
27	chr3:69349400-69354600	Weak transcription	Brain Substantia Nigra	brain
28	chr3:69349400-69355400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:69349600-69356800	Weak transcription	Fetal Thymus	thymus
30	chr3:69350000-69355000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:69350000-69355400	Weak transcription	HSMMtube	muscle
32	chr3:69350000-69374200	Weak transcription	Aorta	Aorta
33	chr3:69350200-69353000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:69350600-69357200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr3:69351200-69353800	Weak transcription	Brain Hippocampus Middle	brain
36	chr3:69351400-69355400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr3:69351600-69353600	Weak transcription	Primary hematopoietic stem cells	blood
38	chr3:69351600-69355200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr3:69351600-69355400	Weak transcription	Fetal Heart	heart
40	chr3:69351600-69356800	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr3:69351800-69353800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr3:69351800-69354000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr3:69351800-69355400	Weak transcription	HSMM	muscle
44	chr3:69351800-69355600	Weak transcription	Fetal Lung	lung
45	chr3:69351800-69355800	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr3:69351800-69355800	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr3:69352000-69352800	Weak transcription	HUVEC	blood vessel
48	chr3:69352000-69355400	Weak transcription	HMEC	breast
49	chr3:69352000-69356800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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