Variant report
Variant | rs1388039 |
---|---|
Chromosome Location | chr4:105925370-105925371 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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(count:2 , 50 per page) page:
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Variant related genes | Relation type |
---|---|
ENSG00000168769 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10026964 | 1.00[JPT][hapmap] |
rs12499100 | 0.84[ASN][1000 genomes] |
rs1490589 | 0.84[ASN][1000 genomes] |
rs168989 | 0.86[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
rs1844655 | 1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
rs1873361 | 0.86[CHD][hapmap];0.95[GIH][hapmap];0.82[EUR][1000 genomes] |
rs195149 | 0.86[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
rs2866763 | 0.82[ASN][1000 genomes] |
rs4563501 | 0.84[ASN][1000 genomes] |
rs4699146 | 0.84[ASN][1000 genomes] |
rs4699151 | 1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
rs6533173 | 0.84[ASN][1000 genomes] |
rs6847240 | 0.84[ASN][1000 genomes] |
rs7676563 | 0.84[ASN][1000 genomes] |
rs7699743 | 0.82[ASN][1000 genomes] |
rs902444 | 0.90[LWK][hapmap];0.90[MKK][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv461609 | chr4:105869548-106366209 | Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
2 | nsv470063 | chr4:105869548-106366209 | Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
3 | nsv595007 | chr4:105869548-106366209 | Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
4 | nsv830024 | chr4:105884350-106037816 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
No data |