Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10026964	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10027060	0.83[ASN][1000 genomes]
rs11930199	0.84[ASN][1000 genomes]
rs12499100	0.96[ASN][1000 genomes]
rs12500583	0.80[AFR][1000 genomes]
rs12511146	0.80[AFR][1000 genomes]
rs13117794	0.83[AFR][1000 genomes]
rs1388039	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs168989	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1844655	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1907144	0.80[AFR][1000 genomes]
rs195149	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2130691	0.80[AFR][1000 genomes]
rs2866763	0.94[ASN][1000 genomes]
rs4563501	0.96[ASN][1000 genomes]
rs4699146	1.00[ASN][1000 genomes]
rs4699151	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6533173	0.96[ASN][1000 genomes]
rs6847240	0.96[ASN][1000 genomes]
rs7676563	0.96[ASN][1000 genomes]
rs7699148	0.80[AFR][1000 genomes]
rs7699743	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv830024	chr4:105884350-106037816	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:105943000-105946000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr4:105943800-105946400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr4:105944400-105945800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:105944400-105946200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:105944600-105949200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:105945600-105947200	Enhancers	Placenta	Placenta

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