Variant report

Variant	rs1844655
Chromosome Location	chr4:105978111-105978112
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:105817499..105822928-chr4:105976984..105982661,7	MCF-7	breast:
2	chr4:105976784..105986292-chr4:106044571..106052702,25	MCF-7	breast:
3	chr4:105975764..105988950-chr4:106062358..106070647,39	MCF-7	breast:
4	chr4:105977547..105979416-chr4:105980836..105982585,2	MCF-7	breast:
5	chr4:105977405..105980331-chr4:106058193..106060635,2	MCF-7	breast:
6	chr4:105976101..105984516-chr4:106064112..106070622,19	MCF-7	breast:
7	chr4:105887583..105897108-chr4:105977318..105984912,20	MCF-7	breast:
8	chr4:105891395..105896462-chr4:105976646..105979475,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000168769	Chromatin interaction
ENSG00000248373	Chromatin interaction
ENSG00000251906	Chromatin interaction
ENSG00000248242	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10026964	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[ASN][1000 genomes]
rs10027060	0.87[ASN][1000 genomes]
rs11930199	0.88[ASN][1000 genomes]
rs12499100	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509636	0.86[CHB][hapmap]
rs1388039	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1490589	0.96[ASN][1000 genomes]
rs168989	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429675	0.86[CHB][hapmap]
rs17429682	0.86[CHB][hapmap]
rs195149	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2214409	0.86[CHB][hapmap]
rs2866763	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4563501	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699146	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4699151	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533173	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6847240	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676563	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699743	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv830024	chr4:105884350-106037816	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:105972000-105978800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:105972600-105979200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:105976200-105978400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr4:105976600-105982400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr4:105976800-105978400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr4:105976800-105978800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr4:105977000-105978200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:105978000-105978200	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links