Variant report

Variant	rs1393018
Chromosome Location	chr5:42187509-42187510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10060873	1.00[ASN][1000 genomes]
rs10064990	1.00[ASN][1000 genomes]
rs10078980	0.83[AMR][1000 genomes]
rs10079521	1.00[ASN][1000 genomes]
rs10461734	0.93[ASN][1000 genomes]
rs10461735	0.93[ASN][1000 genomes]
rs1110874	0.83[ASN][1000 genomes]
rs1119855	0.85[AMR][1000 genomes]
rs11954853	0.96[ASN][1000 genomes]
rs12514243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12515833	0.90[AMR][1000 genomes]
rs12517161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12519296	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12520405	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs12522095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1393017	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1501515	0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1501518	1.00[ASN][1000 genomes]
rs1501519	1.00[ASN][1000 genomes]
rs17586526	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs17586540	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1827329	0.88[ASN][1000 genomes]
rs1909950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1909951	1.00[ASN][1000 genomes]
rs276289	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs276290	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs276291	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs36072701	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4404722	0.96[ASN][1000 genomes]
rs4489104	0.96[ASN][1000 genomes]
rs4533937	0.96[ASN][1000 genomes]
rs4866812	0.94[AMR][1000 genomes]
rs4957449	1.00[CHB][hapmap]
rs4957464	0.92[AMR][1000 genomes]
rs6890248	0.93[ASN][1000 genomes]
rs73091966	0.82[AMR][1000 genomes]
rs73091974	0.83[AMR][1000 genomes]
rs7379247	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7380353	0.96[AMR][1000 genomes]
rs7380870	0.80[AMR][1000 genomes]
rs7715104	0.96[ASN][1000 genomes]
rs7718368	0.95[ASN][1000 genomes]
rs905097	0.83[ASN][1000 genomes]
rs9292843	0.93[ASN][1000 genomes]
rs931230	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs949559	1.00[AFR][1000 genomes]
rs9654394	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1032171	chr5:42015138-42220940	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv462125	chr5:42019110-42192620	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv597885	chr5:42019110-42192620	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1034208	chr5:42119128-42290759	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv4813	chr5:42157598-42202029	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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