Variant report

Variant	rs7379247
Chromosome Location	chr5:42244163-42244164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10060873	0.86[ASN][1000 genomes]
rs10064990	0.86[ASN][1000 genomes]
rs10078980	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10079521	0.86[ASN][1000 genomes]
rs10461734	0.86[ASN][1000 genomes]
rs10461735	0.86[ASN][1000 genomes]
rs1119855	0.82[AMR][1000 genomes]
rs11954853	0.90[ASN][1000 genomes]
rs12514243	0.88[AMR][1000 genomes]
rs12515833	0.83[AMR][1000 genomes]
rs12517161	0.88[AMR][1000 genomes]
rs12517869	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12519296	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12520405	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12522095	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1393017	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1393018	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1501515	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1501518	0.86[ASN][1000 genomes]
rs1501519	0.86[ASN][1000 genomes]
rs16872537	1.00[EUR][1000 genomes]
rs16872543	1.00[EUR][1000 genomes]
rs1827329	0.82[ASN][1000 genomes]
rs1909950	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1909951	0.86[ASN][1000 genomes]
rs276289	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs276290	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs276291	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs28943877	1.00[EUR][1000 genomes]
rs36072701	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4404722	0.90[ASN][1000 genomes]
rs4489104	0.90[ASN][1000 genomes]
rs4533937	0.90[ASN][1000 genomes]
rs4866795	1.00[EUR][1000 genomes]
rs4866812	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4866896	1.00[EUR][1000 genomes]
rs4866901	1.00[EUR][1000 genomes]
rs4957449	1.00[CHB][hapmap]
rs4957464	0.81[AMR][1000 genomes]
rs6882434	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6882555	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6887373	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6887391	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6887759	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6890248	0.86[ASN][1000 genomes]
rs73091966	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73091974	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7380353	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7380870	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7715104	0.90[ASN][1000 genomes]
rs7718368	0.91[ASN][1000 genomes]
rs9292843	0.86[ASN][1000 genomes]
rs931230	0.81[AMR][1000 genomes]
rs949559	1.00[EUR][1000 genomes]
rs9654394	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1034208	chr5:42119128-42290759	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	esv1825573	chr5:42229421-42306381	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv880518	chr5:42231896-42375243	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42242400-42244200	Enhancers	Adipose Nuclei	Adipose
2	chr5:42243800-42244600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links