Variant report

Variant	rs1501515
Chromosome Location	chr5:42173958-42173959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10037143	0.83[ASN][1000 genomes]
rs10060873	0.93[ASN][1000 genomes]
rs10064990	0.93[ASN][1000 genomes]
rs10078494	0.86[ASN][1000 genomes]
rs10078980	0.81[AMR][1000 genomes]
rs10079521	0.93[ASN][1000 genomes]
rs10461734	1.00[ASN][1000 genomes]
rs10461735	1.00[ASN][1000 genomes]
rs1073273	0.86[ASN][1000 genomes]
rs1110874	0.89[ASN][1000 genomes]
rs1119855	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11954853	0.90[ASN][1000 genomes]
rs12514243	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12515833	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12517161	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12519296	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12520405	0.90[AMR][1000 genomes]
rs12522095	0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1393017	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1393018	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1501518	0.93[ASN][1000 genomes]
rs1501519	0.93[ASN][1000 genomes]
rs17586526	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs17586540	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1827329	0.92[ASN][1000 genomes]
rs1875430	0.86[ASN][1000 genomes]
rs1909950	0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1909951	0.93[ASN][1000 genomes]
rs2134102	0.86[ASN][1000 genomes]
rs276289	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs276290	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs276291	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs36072701	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3913458	0.86[ASN][1000 genomes]
rs4404722	0.90[ASN][1000 genomes]
rs4489104	0.90[ASN][1000 genomes]
rs4533937	0.90[ASN][1000 genomes]
rs4626371	0.81[ASN][1000 genomes]
rs4866812	0.92[AMR][1000 genomes]
rs4957449	1.00[CHB][hapmap]
rs4957464	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58911119	0.84[ASN][1000 genomes]
rs6451592	0.86[ASN][1000 genomes]
rs6882434	0.81[AMR][1000 genomes]
rs6882555	0.81[AMR][1000 genomes]
rs6887373	0.81[AMR][1000 genomes]
rs6890248	1.00[ASN][1000 genomes]
rs73091974	0.81[AMR][1000 genomes]
rs7379247	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7380353	0.90[AMR][1000 genomes]
rs7713544	0.86[ASN][1000 genomes]
rs7715104	0.90[ASN][1000 genomes]
rs7718368	0.88[ASN][1000 genomes]
rs905097	0.89[ASN][1000 genomes]
rs905099	0.81[ASN][1000 genomes]
rs9292843	1.00[ASN][1000 genomes]
rs931230	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9654394	0.81[AMR][1000 genomes]
rs990898	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1032171	chr5:42015138-42220940	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv462125	chr5:42019110-42192620	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv597885	chr5:42019110-42192620	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1034208	chr5:42119128-42290759	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv4813	chr5:42157598-42202029	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42173800-42175200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:42173800-42175400	Active TSS	Adipose Nuclei	Adipose

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