Variant report

Variant	rs1397883
Chromosome Location	chr3:24083140-24083141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12638750	0.95[ASN][1000 genomes]
rs1397878	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1511542	0.90[ASN][1000 genomes]
rs17014075	0.97[ASN][1000 genomes]
rs17014078	0.95[ASN][1000 genomes]
rs1986889	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34812592	0.90[ASN][1000 genomes]
rs4858571	0.90[ASN][1000 genomes]
rs62253421	0.95[ASN][1000 genomes]
rs7372315	0.90[ASN][1000 genomes]
rs7635612	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9990311	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24079400-24084200	Weak transcription	Right Atrium	heart
2	chr3:24079600-24084800	Weak transcription	Left Ventricle	heart
3	chr3:24079600-24090400	Weak transcription	Lung	lung
4	chr3:24079800-24088200	Weak transcription	Spleen	Spleen
5	chr3:24081000-24083200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:24081000-24083800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:24081200-24084800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:24082000-24083600	Enhancers	Aorta	Aorta
9	chr3:24082200-24084000	Enhancers	Rectal Smooth Muscle	rectum
10	chr3:24082200-24087000	Enhancers	Colon Smooth Muscle	Colon
11	chr3:24082600-24083400	Enhancers	Psoas Muscle	Psoas
12	chr3:24082800-24083200	Enhancers	Ovary	ovary
13	chr3:24082800-24083400	Enhancers	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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