Variant report

Variant	rs17014075
Chromosome Location	chr3:24084527-24084528
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24082962..24085298-chr3:24090200..24092155,2	K562	blood:
2	chr3:24070180..24073429-chr3:24081033..24085245,3	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12638750	0.97[ASN][1000 genomes]
rs1397878	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1397883	0.97[ASN][1000 genomes]
rs1511542	0.92[ASN][1000 genomes]
rs17014078	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1986889	0.90[ASN][1000 genomes]
rs34812592	0.92[ASN][1000 genomes]
rs4858571	0.92[ASN][1000 genomes]
rs62253421	0.97[ASN][1000 genomes]
rs7372315	0.92[ASN][1000 genomes]
rs7635612	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9831916	0.82[ASN][1000 genomes]
rs9990311	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24079600-24084800	Weak transcription	Left Ventricle	heart
2	chr3:24079600-24090400	Weak transcription	Lung	lung
3	chr3:24079800-24088200	Weak transcription	Spleen	Spleen
4	chr3:24081200-24084800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:24082200-24087000	Enhancers	Colon Smooth Muscle	Colon
6	chr3:24083200-24084800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr3:24083200-24085000	Enhancers	Fetal Stomach	stomach
8	chr3:24083200-24085000	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr3:24083400-24089000	Weak transcription	Psoas Muscle	Psoas
10	chr3:24083600-24084600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:24083600-24084600	Enhancers	NHLF	lung
12	chr3:24083600-24085000	Enhancers	NHDF-Ad	bronchial
13	chr3:24083600-24085200	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr3:24083800-24084600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:24083800-24084600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:24083800-24084600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:24083800-24084600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:24083800-24084800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:24083800-24085000	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr3:24084000-24085000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr3:24084200-24084600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:24084200-24084600	Active TSS	Brain Anterior Caudate	brain
23	chr3:24084200-24084600	Enhancers	HSMMtube	muscle
24	chr3:24084200-24084800	Enhancers	Brain Hippocampus Middle	brain
25	chr3:24084200-24085000	Enhancers	Placenta	Placenta
26	chr3:24084200-24085000	Enhancers	Right Atrium	heart
27	chr3:24084200-24085200	Enhancers	Adipose Nuclei	Adipose
28	chr3:24084400-24084600	Flanking Active TSS	Rectal Smooth Muscle	rectum
29	chr3:24084400-24084800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:24084400-24084800	Flanking Active TSS	Stomach Smooth Muscle	stomach
31	chr3:24084400-24085000	Flanking Active TSS	Aorta	Aorta
32	chr3:24084400-24085000	Enhancers	Ovary	ovary
33	chr3:24084400-24085400	Enhancers	Brain Angular Gyrus	brain
34	chr3:24084400-24085800	Enhancers	Fetal Muscle Leg	muscle

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