Variant report

Variant	rs17014078
Chromosome Location	chr3:24085501-24085502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12638750	1.00[ASN][1000 genomes]
rs1397878	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1397883	0.95[ASN][1000 genomes]
rs1511542	0.90[ASN][1000 genomes]
rs17014075	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1986889	0.87[ASN][1000 genomes]
rs34812592	0.90[ASN][1000 genomes]
rs4858571	0.90[ASN][1000 genomes]
rs62253421	1.00[ASN][1000 genomes]
rs7372315	0.90[ASN][1000 genomes]
rs7635612	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9831916	0.85[ASN][1000 genomes]
rs9990311	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24079600-24090400	Weak transcription	Lung	lung
2	chr3:24079800-24088200	Weak transcription	Spleen	Spleen
3	chr3:24082200-24087000	Enhancers	Colon Smooth Muscle	Colon
4	chr3:24083400-24089000	Weak transcription	Psoas Muscle	Psoas
5	chr3:24084400-24085800	Enhancers	Fetal Muscle Leg	muscle
6	chr3:24084600-24087200	Enhancers	Rectal Smooth Muscle	rectum
7	chr3:24084600-24088600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:24084600-24088800	Weak transcription	HSMMtube	muscle
9	chr3:24084600-24089000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:24084600-24089400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:24084800-24085800	Enhancers	Stomach Smooth Muscle	stomach
12	chr3:24084800-24086200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:24084800-24088600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:24084800-24088800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:24084800-24088800	Weak transcription	NHLF	lung
16	chr3:24085000-24085600	Weak transcription	Left Ventricle	heart
17	chr3:24085000-24086000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:24085000-24086200	Weak transcription	Aorta	Aorta
19	chr3:24085000-24087800	Weak transcription	NHDF-Ad	bronchial
20	chr3:24085000-24088200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:24085000-24088600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:24085000-24088800	Weak transcription	Ovary	ovary
23	chr3:24085000-24089000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:24085000-24089000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr3:24085000-24089000	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr3:24085200-24088800	Weak transcription	Adipose Nuclei	Adipose
27	chr3:24085200-24089200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr3:24085400-24086000	Weak transcription	Brain Angular Gyrus	brain
29	chr3:24085400-24086200	Enhancers	Placenta	Placenta

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